Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n06
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical ...    28   4.5  

>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 336 LRESHQYYRAVVRMHLVLLFTVA 404
           LRE+  Y   VVRMH +LL T++
Sbjct: 224 LRENEHYSETVVRMHKMLLITLS 246


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 336 LRESHQYYRAVVRMHLVLLFTVA 404
           LRE+  Y   VVRMH +LL T++
Sbjct: 224 LRENEHYSETVVRMHKMLLITLS 246


>AF024499-7|AAB70358.3|  733|Caenorhabditis elegans Hypothetical
           protein F42G2.6 protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 273 IFTVNIVAGEISSPEGALEFFLRESHQYYRAVV 371
           IFT      +++  +G   +FLR++H+Y++ +V
Sbjct: 291 IFTSQYQQTKLTMKDGTEGYFLRKNHEYFKKIV 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,372,064
Number of Sequences: 27780
Number of extensions: 269470
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)