Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n06
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    29   3.2  
At3g49440.1 68416.m05404 F-box family protein-related contains w...    28   5.5  
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica...    27   7.3  
At1g13810.1 68414.m01621 expressed protein ; expression supporte...    27   7.3  

>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 300 EISSPEGALEFFLRESHQYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLSD 464
           E S+P+G +   L  S   + A  R H     T++ L      A  +KH ++L D
Sbjct: 542 EASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGD 596


>At3g49440.1 68416.m05404 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain
          Length = 200

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 221 SLMKYCSYYSFCYKFKWRTATRFQ 150
           SL  Y  +Y+FCY  K +T TR +
Sbjct: 143 SLELYDPFYTFCYNMKRKTITRIK 166


>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
           domain-containing protein / HNH endonuclease
           domain-containing protein similar to HepA-related
           protein HARP [Homo sapiens] GI:6693791; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain, PF01844: HNH
           endonuclease
          Length = 1190

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 136 KFEIRMHVCDPDRSIGLRVTTTESYRCKE 50
           KF +R+ +C PD S  +     + +RC E
Sbjct: 74  KFRVRLEICSPD-SFSVTPVQLQGFRCPE 101


>At1g13810.1 68414.m01621 expressed protein ; expression supported
           by MPSS
          Length = 303

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 412 WARASPPI*INTLSCFRTSITVLRMVCKQNLMDLINIYRSRKAPY 546
           W  ASP   IN +    TS  VL + C  +  D   +Y  +K PY
Sbjct: 146 WLGASPDGVINVVKDGVTSCGVLEVKCPFDNRDNSKVYPWKKVPY 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,319
Number of Sequences: 28952
Number of extensions: 235037
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)