Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n03
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 163 2e-41
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 87 2e-18
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 29 0.77
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 28 1.0
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 28 1.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 3.1
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 4.1
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 7.2
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 7.2
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 25 9.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.5
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 25 9.5
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 9.5
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 9.5
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.5
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 25 9.5
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 163 bits (397), Expect = 2e-41
Identities = 75/182 (41%), Positives = 114/182 (62%)
Frame = +1
Query: 97 DTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCE 276
+T L+N K F+ + +G RLDGR ++ R L+I FG EYG VS G T++++ +T E
Sbjct: 6 ETSLNN--KEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTE 63
Query: 277 VAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLC 456
+ +P RP +GI I EL P+A FEA R +D + + RL+EK + S +D ESLC
Sbjct: 64 ITKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLC 123
Query: 457 IVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIXTLTEKDP 636
I+ +K W +R ++ +NHDGNL + A IA +A++ HFRRP+ T G+ V + + E+ P
Sbjct: 124 IISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVP 183
Query: 637 IP 642
+P
Sbjct: 184 VP 185
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 87.4 bits (207), Expect = 2e-18
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Frame = +1
Query: 121 KNFIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQPK 291
+ ++ +++Q R DGR+ +E R++ I+ + G I+ GE + + E+A+P
Sbjct: 23 EQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAEPF 82
Query: 292 QIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEE 471
+ PNEG I N+EL+P+ + +F+ +DL + + L + + S I+L+SLCI ++
Sbjct: 83 ENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFEKK 142
Query: 472 KVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGD--RVI-IXTLTEKDPIP 642
W L +I LN+DG+ + A A A++ + P D D RVI TLT +
Sbjct: 143 AAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTLTRPVQLS 202
Query: 643 T 645
T
Sbjct: 203 T 203
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 599 SPSLVKSGLLKCAIEASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSMH 432
S L S ++ C +IL HS+ LP RT I + Q S + SMH
Sbjct: 467 SHQLYDSDVMDCCFSFLASILTHSIALPRLLRTKIDLCTLQISLSNPTSTVLISMH 522
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 302 GLICFG*ATSHVTSDRIFVSPKDTI 228
GLI F AT+H ++ + F+ PKDT+
Sbjct: 203 GLIAFRKATAHQSAMKEFLKPKDTL 227
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/72 (20%), Positives = 29/72 (40%)
Frame = -1
Query: 644 VGIGSFSVNVXIITRSPSLVKSGLLKCAIEASVAILAHSVKLPSWFRTLILILKDQTFSS 465
+G G+F+ T S + + SV + + +PSW + + IL +S
Sbjct: 172 IGKGNFTSTTVTTTTSATATPTASASSNAVESVFVTKTAASVPSWIKVITKILGAAVVTS 231
Query: 464 TTMQSDSRSMHF 429
+ + +HF
Sbjct: 232 IVLLLEKIFLHF 243
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 394 LVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLN 510
LVR+L K D + + +++LC +V + + I I ++N
Sbjct: 1014 LVRMLGKSNGDLRAVIMDTLCAIVSQLGYDYSIFIPMVN 1052
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 280 AQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 432
A +I+PNE + + V NP + E + V ++ L+K Y++S+
Sbjct: 189 ASSARIQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESE 239
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 215 NMVAVLCLWEKRRSYQKSHVKSLSQNK*DQMKASYLLMLN 334
N A L +W K +S ++ H S +K ++ K YLL N
Sbjct: 65 NGKACLRVWLKHKSRKRYHGYMTSTDKDEEEKNDYLLKSN 104
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 393 SCKIIRKMLQRFKMHRPGITL 455
SCK +R + + F+ RPGI+L
Sbjct: 292 SCKQVRFVYETFRRMRPGISL 312
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 88 KMRDTCLSNCEKNFIQKIVSQGH 156
K++ TC+ + +K FIQ + G+
Sbjct: 482 KLKQTCIEDEDKRFIQACIDAGY 504
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +1
Query: 220 GCCIVSLG--ETKILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTV 390
GC I S E K + V C + K +RP ++ +NP+ N D V
Sbjct: 1721 GCLITSTSAAEKKSIFLVCCSIVGDKSVRPFFKAFLLDKVINPLVFKSCGENNFIDKDV 1779
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 387 CLSCKIIRKMLQRFKMHRP 443
CL+C II++ L+R K+ P
Sbjct: 580 CLACAIIQRSLERKKLSTP 598
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 68 KKYEPITKCVILVYRIV-KRISYKRSYLKDI 157
K+Y + KC I++ IV K I+Y R Y+ ++
Sbjct: 818 KRYLSLIKCAIVIQSIVRKNIAYSR-YINEL 847
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 387 CLSCKIIRKMLQRFKMHRP 443
CL+C II++ L+R K+ P
Sbjct: 580 CLACAIIQRSLERKKLSTP 598
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +2
Query: 14 KNNHTFIARYASL---NRIFTKKYEPITKCVILVYRIVKRISYKRSYLKDIAWTVEILMK 184
+N F+ R L N K E +T+C ILV + LK++ VE M
Sbjct: 146 RNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIVEDCMH 205
Query: 185 PEN*IYHL 208
+ IYH+
Sbjct: 206 NIHPIYHI 213
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = -1
Query: 653 YKTVGI----GSFSVNVXIITRSPSLVKSGLLKCAIEASVAIL 537
YK G+ G NV PS+ K LK A+EA +AIL
Sbjct: 492 YKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAIL 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,474
Number of Sequences: 5004
Number of extensions: 56227
Number of successful extensions: 157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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