Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n03
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...   111   9e-27
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809...    57   1e-08
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210...    36   0.021
10_01_0238 + 2496974-2497618,2497738-2497980,2498202-2499211,249...    30   1.9  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    29   4.3  
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099...    27   9.9  

>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score =  111 bits (266), Expect(2) = 9e-27
 Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 16/164 (9%)
 Frame = +1

Query: 208 GSEYGCCIVSLGETKILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLT 387
           G E G   V LG+T+++   T ++ QP + RPNEG + I  E +PMA P FE  R  +  
Sbjct: 70  GVEDGSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESA 129

Query: 388 VYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDG-------------NLT 528
           + L R++++  ++S+ +D+ESLC+V  + VWS+R+++ +L++ G             NL 
Sbjct: 130 IELGRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLI 189

Query: 529 ECASIATLASIAHFRRPDFT---RDGDRVIIXTLTEKDPIPTVL 651
           + A+IA LA+++ FRRP+ T    DG +V +     +DP+P  +
Sbjct: 190 DAANIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTI 233



 Score = 27.1 bits (57), Expect(2) = 9e-27
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 118 EKNFIQKIVSQGHRLDGRNFNETRKLDISFG 210
           E+ FI++ +    R+DGR   + R+L I FG
Sbjct: 13  EREFIERALQSDLRVDGRRPFDFRRLKILFG 43


>11_03_0222 +
           11880333-11880551,11880667-11880736,11880839-11880944,
           11881490-11881556,11881597-11881692
          Length = 185

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
 Frame = +1

Query: 127 FIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCEVAQPKQI 297
           F+++ + +  R D R   E R   ++     S +G  +V LG+T +L+ +  EV  P   
Sbjct: 30  FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89

Query: 298 RPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 477
            P+EG I +   + P+ +P     R  ++   + + LE     S  ++L+ LC++  +  
Sbjct: 90  APDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLKELCLISGKAS 149

Query: 478 W 480
           W
Sbjct: 150 W 150


>12_02_0002 +
           12119832-12120003,12120620-12120866,12121011-12121050,
           12121584-12121676,12124850-12124928,12124973-12125019,
           12126178-12126266,12126353-12126424,12126617-12126710,
           12127167-12127206,12127321-12127445,12130472-12130615,
           12131510-12131740
          Length = 490

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 274 EVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSK 432
           E+ +P  + P++G + I V+ +P AAP FE     + +  L   L++C    K
Sbjct: 155 ELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGK 207



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
 Frame = +1

Query: 106 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGC---CIVSLGETKILSEV 267
           LS  EK+FI+  ++Q  R DGR   + R + +  G     +G    C+ S+G       V
Sbjct: 4   LSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQVFGFISPCVFSIGRA-----V 58

Query: 268 TCEVAQPKQIRPNEGI-IFINVELNPMAAPQFEANRQTDLTVYLV 399
            C  A P     + G+   + +E++P AA + +A     + + +V
Sbjct: 59  ACIEASPTAEYTDAGLQDIVQIEVDPAAAAEIDAKLTVAVQIEVV 103



 Score = 31.1 bits (67), Expect = 0.80
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 403 LLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIA 564
           + +K       IDL SL +V  +  W L I+  V++ DGNL +  + A   +++
Sbjct: 317 IFKKTLMKRAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALS 370


>10_01_0238 +
           2496974-2497618,2497738-2497980,2498202-2499211,
           2499329-2499370,2499465-2499492
          Length = 655

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -3

Query: 138 LLYEILFTIR*TSITHFVIG--SYFFVNILFKEAYL 37
           LL +I+F IR T     ++G  S+ FVNI+++E YL
Sbjct: 490 LLLDIVFGIRDTMFWEELVGRKSFDFVNIVYQEVYL 525


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 557 EASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSM 435
           E +  I  H   LP      ILIL D++   + +Q+DSRS+
Sbjct: 721 EGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSRSL 761


>01_06_1486 -
           37709159-37709377,37709558-37709821,37709903-37709995,
           37710387-37710581,37710665-37710763,37710884-37711132,
           37711264-37711467,37711543-37711602,37711731-37711913,
           37712382-37712999,37713101-37713169,37713275-37713853
          Length = 943

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 557 EASVAILAHSVKLPSWFRTLILILKDQTFSSTTMQSDSRSM 435
           E +  I  H   LP      ILIL D++   + + SDSRS+
Sbjct: 733 EGNAVIRRHLESLPLETFDSILILADESVEDSIVHSDSRSL 773


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,903
Number of Sequences: 37544
Number of extensions: 304894
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)