Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n03
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2) 91 5e-19
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 31 1.1
SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41) 31 1.1
SB_15144| Best HMM Match : Folate_rec (HMM E-Value=0.0076) 31 1.1
SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 29 2.5
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0) 29 4.4
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 5.8
SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06) 28 5.8
SB_34006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34) 28 7.6
SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41) 28 7.6
>SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)
Length = 267
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/76 (51%), Positives = 58/76 (76%)
Frame = +1
Query: 343 MAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGN 522
MA+P FEA R ++L V L R +E+ Y +S+ ID ESLCIV EKVWS+R++I+VL+H GN
Sbjct: 1 MASPAFEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVLDHSGN 60
Query: 523 LTECASIATLASIAHF 570
+ +CA I+ + +++HF
Sbjct: 61 ILDCACISAITALSHF 76
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 86.2 bits (204), Expect = 2e-17
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 3/185 (1%)
Frame = +1
Query: 91 MRDTCLSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILS 261
M D LS E+ FI Q +R DGR+ + R ++ G + G + L +T IL
Sbjct: 1 MADAQLSVYEREFIISGAEQDYRSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILV 60
Query: 262 EVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCID 441
V E+ +P + P G + V+ + A+ +F DL L+R L++ Y + ID
Sbjct: 61 GVKAEIGEPNLLTPGCGRVEFFVDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAID 120
Query: 442 LESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIXTL 621
L SL I+ ++ W L ++ VL GNL + S+A A++ + R P+ T D +
Sbjct: 121 LSSLSIIHGQQCWVLYVDTLVLECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELE 180
Query: 622 TEKDP 636
DP
Sbjct: 181 ISDDP 185
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 365 ASNCGAAIGLSSTLINMM---PSFGLICFG*ATSHVTSDRIFV 246
A CG I SSTL+ MM +FG + FG H +R+++
Sbjct: 1054 ALECGIPISKSSTLVGMMSIGSTFGRLFFGKVCDHPKVNRLYI 1096
>SB_25000| Best HMM Match : 7tm_1 (HMM E-Value=1.49995e-41)
Length = 361
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 56 RIFTKKYEPITKCV-ILVYRIVKRISYKRSYLKDIAWTVEILMKPEN*I-YHLVLNMVAV 229
R+ +K + K V ILV I+ + YL W +P+ + Y+ VLN + V
Sbjct: 243 RVNVRKLQRKRKAVAILVLIILMFVISWGPYLSLAIWDAFFPPEPQGIVEYYTVLNKIFV 302
Query: 230 LCLW 241
LCLW
Sbjct: 303 LCLW 306
>SB_15144| Best HMM Match : Folate_rec (HMM E-Value=0.0076)
Length = 403
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 22 SHIYC*VCLFKQNIHKKI*TNNKMRDTC---LSNCEKNFIQKIVSQGHRLDGRNFNETRK 192
+++YC +C QN + T + C S C+K +++ ++ +GR F E R+
Sbjct: 296 NYLYCYICAPNQNTFFRRSTLTVCEEFCNRIYSACKKAYLKGMMIGDMYSNGREFCEGRR 355
Query: 193 LDIS-FGSEYGC 225
++S S+ GC
Sbjct: 356 FEVSDKNSKQGC 367
>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 241 GETKILSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCY 420
GET + E EVA +++ E I F+ EL + + A R+ L R++
Sbjct: 423 GETMVELEAKDEVASEREMEREEKIAFLQAELKKLVEREDIAEREVQ---KLQRII---- 475
Query: 421 KDSKCIDLESL 453
D +CI++E +
Sbjct: 476 -DEECIEMEQI 485
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 439 DLESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFR 573
DLE VVE+K S + +KVLN +G+ + T AS+ +
Sbjct: 778 DLEEQYRVVEDKYLSAQKELKVLNEEGDNKAFEQLQTEASVIQMK 822
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 130 IQKIVSQGHRLDGRNFNETRKLDISFGSE 216
+ IV+ G +DG +F+ LDI+FG +
Sbjct: 443 VSVIVTNGEAMDGTDFDSPAPLDITFGPD 471
>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.7 bits (61), Expect = 4.4
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -2
Query: 121 FHNSINKYHAFCYWFIFF 68
+++++NK + FC W +FF
Sbjct: 339 YYSTLNKVYVFCVWMVFF 356
>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
Length = 1958
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 130 IQKIVSQGHRLDGRNFNETRKLDISFGSE 216
+ IV+ G +DG +F+ LDI+FG +
Sbjct: 1770 VSVIVTNGEAMDGTDFDSPAPLDITFGPD 1798
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 127 FIQKIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVTCEVAQ 285
F I+ + R DGR F+E R +D + + +G + GET+ T EV Q
Sbjct: 285 FRANILEKLQRCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQFPPFSTNEVKQ 340
>SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)
Length = 841
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 256 LSEVTCEVAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEK 414
LS + ++ PK + NE +I + V + + A + R+T L L++L+ +
Sbjct: 523 LSSIIEVISSPKNVVQNEALIAMTVMASTVKAEFYPKLRETGLMHQLIKLIRE 575
>SB_34006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 233 CLWEKRRSYQKSHVKSLSQNK*D---QMKASYLLMLNLILW 346
C W +YQ + SL N+ ++K MLNL++W
Sbjct: 286 CWWNSNTAYQAKQISSLIGNQYSDPRKIKEDLSKMLNLVIW 326
>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
Length = 405
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -2
Query: 121 FHNSINKYHAFCY----WFIFFCEYSV*RGIPSNK 29
F+N ++K HAFCY W ++ C S GIP +
Sbjct: 247 FYN-LDKVHAFCYQTNKWQVYECLVSQEHGIPPRR 280
>SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41)
Length = 247
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 130 IQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEV 267
++ + +G R+DGR +E RK+ G G + +G TK L+ V
Sbjct: 4 LEVLSPEGLRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATV 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,372,863
Number of Sequences: 59808
Number of extensions: 394557
Number of successful extensions: 793
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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