Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n03
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 62  FTKKYEPITKCVILVYRIVKRISYKRSYLKDIAW 163
           F+     + K V L+YRI+      +++LK  AW
Sbjct: 93  FSNSISQLRKEVSLLYRILLGAKDYQTFLKTAAW 126


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 118 EKNFIQKIVSQGHRLDGRNFNETRKLDISFG 210
           EK  + +++S  + L+    NE+  L++ FG
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 118 EKNFIQKIVSQGHRLDGRNFNETRKLDISFG 210
           EK  + +++S  + L+    NE+  L++ FG
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,302
Number of Sequences: 438
Number of extensions: 3939
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)