Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10n03
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60500.2 68416.m06767 3' exoribonuclease family protein simil... 157 8e-39
At3g60500.1 68416.m06766 3' exoribonuclease family protein simil... 157 8e-39
At3g12990.1 68416.m01618 3' exoribonuclease family protein simil... 151 5e-37
At1g60080.1 68414.m06769 3' exoribonuclease family domain 1-cont... 77 1e-14
At3g07750.2 68416.m00940 3' exoribonuclease family domain 1-cont... 69 3e-12
At3g07750.1 68416.m00939 3' exoribonuclease family domain 1-cont... 69 3e-12
At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to ... 33 0.13
At3g26700.1 68416.m03339 protein kinase family protein contains ... 31 0.88
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 30 1.2
At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619 C... 30 1.5
At3g46210.1 68416.m05002 3' exoribonuclease family domain 1-cont... 27 8.2
>At3g60500.2 68416.m06767 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 157 bits (380), Expect = 8e-39
Identities = 74/181 (40%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Frame = +1
Query: 118 EKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQI 297
E F++ + R+DGR + RKL I FG EYG V LG+T ++ VT ++ QP +
Sbjct: 15 ESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGFVTAQLVQPYKD 74
Query: 298 RPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 477
RPNEG + I E +PMA P FE R + V L R++++ ++S+ +D ESLC++ + V
Sbjct: 75 RPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMV 134
Query: 478 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFT---RDGDRVIIXTLTEKDPIPTV 648
WS+RI++ +L++ GNL + A+IA LA++ FRRPD T +G VII L E++P+P +
Sbjct: 135 WSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLI 194
Query: 649 L 651
+
Sbjct: 195 I 195
>At3g60500.1 68416.m06766 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 157 bits (380), Expect = 8e-39
Identities = 74/181 (40%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Frame = +1
Query: 118 EKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQI 297
E F++ + R+DGR + RKL I FG EYG V LG+T ++ VT ++ QP +
Sbjct: 15 ESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHVMGFVTAQLVQPYKD 74
Query: 298 RPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 477
RPNEG + I E +PMA P FE R + V L R++++ ++S+ +D ESLC++ + V
Sbjct: 75 RPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAVDTESLCVLAGKMV 134
Query: 478 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFT---RDGDRVIIXTLTEKDPIPTV 648
WS+RI++ +L++ GNL + A+IA LA++ FRRPD T +G VII L E++P+P +
Sbjct: 135 WSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVIIHPLEEREPLPLI 194
Query: 649 L 651
+
Sbjct: 195 I 195
>At3g12990.1 68416.m01618 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 307
Score = 151 bits (365), Expect = 5e-37
Identities = 71/181 (39%), Positives = 113/181 (62%), Gaps = 3/181 (1%)
Frame = +1
Query: 118 EKNFIQKIVSQGHRLDGRNFNETRKLDISFGSEYGCCIVSLGETKILSEVTCEVAQPKQI 297
E F++ + R+DGR + RKL I FG EYG V LG+T +++ VT ++ QP +
Sbjct: 15 ESKFVESALQSELRVDGRGLYDYRKLTIKFGKEYGSSQVQLGQTHVMAFVTAQLVQPYKD 74
Query: 298 RPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 477
RP+EG I E +PMA P FE + V L R++++ ++S+ +D ESLC++ + V
Sbjct: 75 RPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAVDTESLCVLAGKLV 134
Query: 478 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDR---VIIXTLTEKDPIPTV 648
WS+RI++ +L++ GNL + A++A LA++ FRRPD T GD VII E++P+P +
Sbjct: 135 WSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVIIHPPEEREPLPLI 194
Query: 649 L 651
+
Sbjct: 195 I 195
>At1g60080.1 68414.m06769 3' exoribonuclease family domain
1-containing protein similar to SP|Q96B26 Exosome
complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal RNA
processing protein 43) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 302
Score = 76.6 bits (180), Expect = 1e-14
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 3/172 (1%)
Frame = +1
Query: 127 FIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCEVAQPKQI 297
F ++ +S+ R DGR + R ++ G + G + +G T +L+ + EV P
Sbjct: 27 FFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPSTD 86
Query: 298 RPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKCIDLESLCIVVEEKV 477
P+EG I I + P+ +P R + + + L S IDL+ LC+V +
Sbjct: 87 SPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLKELCLVSGKAA 146
Query: 478 WSLRINIKVLNHDGNLTECASIATLASIAHFRRPDFTRDGDRVIIXTLTEKD 633
W ++I L+ DG L + A +A +A+ ++ + P + + I+ EKD
Sbjct: 147 WMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGEKD 198
>At3g07750.2 68416.m00940 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 68.9 bits (161), Expect = 3e-12
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = +1
Query: 106 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCE 276
LS E++FI+ ++Q R DGR R + + G G V +G T +++ V E
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 277 VAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKC-----ID 441
+ +P ++P++G + + ++ +P A P F +L+ L L++C K I+
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122
Query: 442 LESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRP 579
L SL I + W L I+ V++ DGNL + A A++ + P
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP 168
>At3g07750.1 68416.m00939 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 68.9 bits (161), Expect = 3e-12
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Frame = +1
Query: 106 LSNCEKNFIQKIVSQGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEVTCE 276
LS E++FI+ ++Q R DGR R + + G G V +G T +++ V E
Sbjct: 3 LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62
Query: 277 VAQPKQIRPNEGIIFINVELNPMAAPQFEANRQTDLTVYLVRLLEKCYKDSKC-----ID 441
+ +P ++P++G + + ++ +P A P F +L+ L L++C K I+
Sbjct: 63 IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122
Query: 442 LESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASIAHFRRP 579
L SL I + W L I+ V++ DGNL + A A++ + P
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP 168
>At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to
exonuclease RRP41 [Arabidopsis thaliana] GI:6164938
Length = 241
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +1
Query: 148 QGHRLDGRNFNETRKLDISFG---SEYGCCIVSLGETKILSEV--TCEVAQPKQIRPNE- 309
+G RLDGR FNE R++ G G + +G TK+++ V E+ Q + N+
Sbjct: 7 EGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDH 66
Query: 310 GIIFINVELNPMAA----PQFEANRQTDLTVYLVRLLEKC 417
++ + + Q R T+L++ + + +E C
Sbjct: 67 AVVLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEAC 106
>At3g26700.1 68416.m03339 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 380
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -1
Query: 278 TSHVTSDRIFVSPKDTIQQPYSEPNDISSFRVSL 177
+SH+ +D+IF+SP+ + +SE +D+ +F V L
Sbjct: 236 SSHIVADQIFLSPEVQEFKRFSEKSDVYAFGVFL 269
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 136 KIVSQGHRLDGRNFNETRKLDIS---FGSEYGCCIVSLGETKILSEVT 270
+++S G R+DGR+ +E R + + +G + S G+T++L VT
Sbjct: 357 RMISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVT 404
>At5g46210.1 68418.m05686 cullin, putative similar to SP|Q13619
Cullin homolog 4A (CUL-4A) {Homo sapiens}; contains Pfam
profile PF00888: Cullin family
Length = 792
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 346 AAPQFEANRQTDLTVYLVRLLEKCYKD--SKCIDLESLCIVVEEKVWSLRINIKVL 507
AA Q + TDLTV+L R +EKC++D + + + S+ + ++ K N++ L
Sbjct: 149 AALQSLVGQNTDLTVFLSR-VEKCWQDFCDQMLMIRSIALTLDRKYVIQNPNVRSL 203
>At3g46210.1 68416.m05002 3' exoribonuclease family domain
1-containing protein similar to SP|Q9NQT4 Exosome
complex exonuclease RRP46 (EC 3.1.13.-) (Ribosomal RNA
processing protein 46) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 239
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 406 LEKCYKDSKCIDLESLCIVVEEKVWSLRINIKVLNHDGNLTECASIATLASI 561
+EK Y+ ++S+C++ + + I+V++ DG+L CA A A++
Sbjct: 76 VEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAINAACAAL 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,550
Number of Sequences: 28952
Number of extensions: 277814
Number of successful extensions: 688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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