Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10n02
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43840| Best HMM Match : NDK (HMM E-Value=0)                        212   2e-55
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   6e-13
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)                   30   1.3  
SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_43840| Best HMM Match : NDK (HMM E-Value=0)
          Length = 786

 Score =  212 bits (518), Expect = 2e-55
 Identities = 97/148 (65%), Positives = 111/148 (75%)
 Frame = +2

Query: 83   ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 262
            ERTF+M+KPD V RGL+G II RFEKKGFKLV +KFV  SE+  ++HY  LA   F+ GL
Sbjct: 639  ERTFLMIKPDAVSRGLIGEIISRFEKKGFKLVAMKFVKKSEDHFRKHYESLAKLKFYDGL 698

Query: 263  VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDXVE 442
             KYMS  PV  MVWEGL VVKT R MLG T+PA S PGTIRGD  I +GRNIIHGSD VE
Sbjct: 699  CKYMSQTPVCAMVWEGLGVVKTARVMLGETDPAKSLPGTIRGDFSIHIGRNIIHGSDAVE 758

Query: 443  SAKKEIGLWFTDKEVVGWTPANENWVYE 526
            +AK+EI LWF D E+V WTP N  W+YE
Sbjct: 759  TAKEEIALWFKDDELVDWTPCNNPWMYE 786



 Score =  128 bits (310), Expect = 3e-30
 Identities = 68/109 (62%), Positives = 78/109 (71%)
 Frame = +2

Query: 83  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 262
           ERTFIMVKPDGVQRGLVG II+RFE+KGFKLV LK V  SEE L++HY+DLA  PF+PGL
Sbjct: 127 ERTFIMVKPDGVQRGLVGEIIKRFEQKGFKLVALKMVQESEEHLKKHYADLAHLPFYPGL 186

Query: 263 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVG 409
           VK+MSSGPVV M                    ADS+PGTIRGD C+ +G
Sbjct: 187 VKFMSSGPVVAM--------------------ADSKPGTIRGDFCVHIG 215


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
 Frame = +2

Query: 83   ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 262
            + T  ++KP+ V+      I +R ++ GFK+   K V  S+EL  Q Y +   + FF GL
Sbjct: 673  QSTVAVIKPE-VEPDQRELIKQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGL 731

Query: 263  VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQ---PGTIRGDLCIQVGRNIIHGSD 433
              YMSSGP + MV    + V   R ++G  +P  ++   P +IR  L   V +N++HG  
Sbjct: 732  TDYMSSGPTMFMVLSKEDAVSGWRSLMGPVDPEQAKEMAPESIRAALGKDVMKNVVHGPS 791

Query: 434  XVESAKKEIGLWFTDKEVV 490
              E A K I  +F + +++
Sbjct: 792  DPEKAGKVIKEFFPEAKIL 810



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 4/142 (2%)
 Frame = +2

Query: 77  QRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFP 256
           Q +RT  +++PD + R    +I+ + ++ GF++   K +  + E  ++ YS+   + FF 
Sbjct: 536 QLQRTLALIRPDAL-RSRRESIMSKIQEAGFEIAMSKEMHLTREQAEEFYSEHKDQEFFD 594

Query: 257 GLVKYMSSGPVVPMVWEGLNVVKTGRQMLG---ATNPADSQPGTIRGDLCIQVGR-NIIH 424
            LV  MSSGP++ +     + ++  R MLG        D  P ++R    ++    N +H
Sbjct: 595 TLVTNMSSGPMMALCLAREDAIEGWRGMLGPKEVEKAKDEAPESLRAQFQVEDSPINPLH 654

Query: 425 GSDXVESAKKEIGLWFTDKEVV 490
           GSD  E+A+KEI  +F  +  V
Sbjct: 655 GSDTAENAEKEIQKFFPMQSTV 676


>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1373

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 333 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 241
           R VF T+   HT+ T G E +YF RP K+ R
Sbjct: 194 RAVFNTMVVLHTVLTKGEETLYFERPIKRPR 224


>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
          Length = 908

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 333 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 241
           R VF T+   HT+ T G + +YF RP ++ R
Sbjct: 759 RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 789


>SB_43132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 333 RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 241
           R VF T+   HT+ T G + +YF RP ++ R
Sbjct: 46  RAVFNTMVVLHTVLTKGEQTLYFERPIRRPR 76


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 127 TTLYTIRLNHNKST---LTLFRHHEILLTCSINYTCTTA 20
           TT YT+  ++  +T    T    H    TC+ +YTCTT+
Sbjct: 149 TTSYTLTTSYTCTTSYTCTTSYTHTTSYTCTTSYTCTTS 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,503,406
Number of Sequences: 59808
Number of extensions: 385931
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)