Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m22
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 35 0.012
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 33 0.037
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 31 0.11
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.35
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.80
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 28 1.1
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 28 1.4
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 28 1.4
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 27 3.2
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 4.3
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 23 4.5
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 5.6
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 5.6
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 5.6
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 5.6
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 5.6
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 7.5
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 7.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.5
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 7.5
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.5
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 7.5
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 7.5
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 9.9
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.7 bits (76), Expect = 0.012
Identities = 25/106 (23%), Positives = 47/106 (44%)
Frame = +1
Query: 289 DSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKM 468
DS EE RLTSSR + + E S+ S+ E + E K+++
Sbjct: 18 DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAA 77
Query: 469 AKEAIANLERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDIDVAKE 606
++++ ++ E ++ +T+S S DE E+ +E + + E
Sbjct: 78 SEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESE 123
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 33.1 bits (72), Expect = 0.037
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 392 IPVDVKAASSSHNLTF--TFSLQFSRELVNLFSSSESRYK*YPI 267
I V V A+ +S NL F S F L+N+FSS+ S+Y+ YPI
Sbjct: 580 ISVPVSASDASSNLAFLTNMSSNFLSVLLNVFSSTPSQYR-YPI 622
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 292 SDEEKRLTSSRENCNEKVKVKLCDEEAALT--STGMGRSTTTEDIDDHLMSEEDMKQSLK 465
S+EE + ++ N +EK VK+ DE A +T ++ +G+S+ D SE + S
Sbjct: 147 SNEEVGIPAT--NSSEKSNVKIADEIAEVTHSNSSIGKSSADLSSDSSSDSESNTSFSET 204
Query: 466 MAKEAIANLERDLQKMDTKSSPKS 537
+E A + D + M + PK+
Sbjct: 205 DVEEEKAEEKSDAESMAPSTPPKT 228
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.9 bits (64), Expect = 0.35
Identities = 17/84 (20%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 88 LGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKK 267
L E L+ D D +R+R+++++ + + ++ + NG + KK +VK++
Sbjct: 42 LSESLNKKSKSESDEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEE 101
Query: 268 IGYH-LYRDSDEEKRLTSSRENCN 336
++ + + S + KR++ + + N
Sbjct: 102 EDFNEIAKPSPKHKRVSKANGSKN 125
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 0.80
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Frame = +1
Query: 241 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 420
KKP KK + + +E+ + E +EK V+ + + S +D+
Sbjct: 75 KKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEK-PVRKNKKSSKKASPKNAFDALADDM 133
Query: 421 DDHLMSEEDMKQSLKMAKEAIANLERD-----LQKMDTKSSPKSAQMDEINLEAGAEVRK 585
DD + EE+ + S K K+ + +D L D +SS K + + + E +K
Sbjct: 134 DDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKK 193
Query: 586 DIDVAKE 606
D K+
Sbjct: 194 DRKTRKK 200
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 415 DIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDID 594
++DDHL S MA+E + ++K+D K P MD+ E ++R +
Sbjct: 121 NVDDHLSSNP------LMAEEYAPEIFEYIRKLDLKCLPNPKYMDQ-QKELTWKMR---E 170
Query: 595 VAKEALEQIHQNF 633
+ E L +IH NF
Sbjct: 171 ILNEWLVEIHSNF 183
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 211 GISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTS-SRENCNEKVKVKLCDEEAALTST 387
GI N LHA KP+I K +HL+ S L S S E+ + DE T
Sbjct: 128 GIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSSEDNADATNSFYLDEPEFCTIK 187
Query: 388 G 390
G
Sbjct: 188 G 188
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.9 bits (59), Expect = 1.4
Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 2/153 (1%)
Frame = +1
Query: 190 LNQNVDDGISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEE 369
+N + D G S S A + + I + D DE S E E + + ++
Sbjct: 113 MNWDFDMG-SKTESNRASNTVDLDAIISRNRKPDDDEFPSSFPSEEELQEPEQENIDSDD 171
Query: 370 AALTSTGMGRSTTTEDIDDHLM--SEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQ 543
L G G E+ D+ SE + + + + AN+ D+ + ++
Sbjct: 172 EDLAIDGFGAGAIAENEDESSQDESESEEEDDITEPVPSFANISTQDFNSDSAAGSSDSE 231
Query: 544 MDEINLEAGAEVRKDIDVAKEALEQIHQNFGNL 642
DE + + D K + H +F ++
Sbjct: 232 EDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSM 264
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/96 (22%), Positives = 40/96 (41%)
Frame = +1
Query: 346 KVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKS 525
K+ L D A+ GR + I D + ++ +++ +E I N+E L K +
Sbjct: 5 KLNLEDVNASTKKYSRGRKLNPKKIKD-----KKLRSNIQKIEERIENVESSLAKTEILH 59
Query: 526 SPKSAQMDEINLEAGAEVRKDIDVAKEALEQIHQNF 633
++ LE + R+D ALE ++F
Sbjct: 60 EDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSF 95
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 136 DTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLT 315
+T+ RKS+ E HH N+ D S SL + +K + HL R S +
Sbjct: 1293 ETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQDS---RKSLHRHLSRSSSRASKKP 1349
Query: 316 S 318
S
Sbjct: 1350 S 1350
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +1
Query: 490 LERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDIDVAKEALEQ 618
LE++ +M +++ + +E N+E E +DI+++ E+ ++
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDE 67
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 3.2
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +1
Query: 214 ISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGM 393
I R L + G H DSDE K SS E+ +E + K ++ +L +
Sbjct: 258 IPGRRPLSISSDLYNDSNSGSHSNDDSDETKLKQSSTESSSELLDEKDKFDKNSLNDPFV 317
Query: 394 GRSTTTEDIDDHLMSEEDMKQSLKMAK 474
T + +H +SEE K S K ++
Sbjct: 318 ---TIRKSSYEHEISEEHKKHSKKRSE 341
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 475 EAIANLERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDIDVAKEALEQIHQNF 633
E + NLER L+++ + + DE + E RK+ + +E I + +
Sbjct: 414 EVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKY 466
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 22.6 bits (46), Expect(2) = 4.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 477 FFCHFQTLFHIF 442
FFC FQ LF+ F
Sbjct: 180 FFCTFQLLFYAF 191
Score = 21.8 bits (44), Expect(2) = 4.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 654 AHRLQVSKILMNLFKCFFRYIYIFTNFSTSFQ 559
+H L K L N C F + + F+ SF+
Sbjct: 113 SHNLGFKKTLYNRAYCLFANLPVGAPFAASFR 144
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 379 TSTGMGRSTTTEDIDDHLMSEE 444
+ G+ ST ED+D+H +S+E
Sbjct: 658 SQAGINPSTKLEDLDEHTLSDE 679
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = +1
Query: 241 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 420
+KP + KKK E T +EN ++ + +EEA + R+T+ +
Sbjct: 297 RKPTLRKKKS----IPKKQNESSSTIQKENTVQQ-EASSSEEEAVKSLPETQRTTSRIET 351
Query: 421 DDHLMSEEDMKQSLKMAKEAIANLERDLQKMD 516
+ + EE+M+ + +E + N E + + D
Sbjct: 352 QEEEIKEEEMEGEEEEEEEEVPNYESENELED 383
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 292 SDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGR 399
SD+E+ + C EK K K C+ E + G GR
Sbjct: 74 SDDEESCEKKKPKCCEKKKPKCCESE---QNNGCGR 106
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 175 ELDHHLNQNVDDGISN 222
E+DHH+ + +DD +SN
Sbjct: 394 EIDHHVQEIIDDVVSN 409
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 5.6
Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Frame = +1
Query: 286 RDSDEEKRLTSSRENCNEKVK-VKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSL 462
R++ + L + ++ CNEK+K + + EEA + + + + + +D
Sbjct: 912 RNAAKRSLLLARKKECNEKIKSLGVLPEEAFIKYVSTSSNAIVKKLHKINEALKDYGSVN 971
Query: 463 KMAKEAIANLERDLQKMDTKSSPKSAQMDEIN-LEAGAEVRKDIDVAKEALEQIHQNFGN 639
K A E N + + + + I+ L + RKD + + +Q+ ++F
Sbjct: 972 KKAYEQFNNFTKQRDSLLARREELRRSQESISELTTVLDQRKD-EAIERTFKQVAKSFSE 1030
Query: 640 L 642
+
Sbjct: 1031 I 1031
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +1
Query: 412 EDIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQMDE 552
+D+ D ++ + + + +AI +ERD+Q+ K A++++
Sbjct: 751 DDVKDLKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEK 797
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +1
Query: 367 EAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQM 546
E T + RS + + +D+K+ + ++ N ER+ + + S S Q+
Sbjct: 147 ETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQL 206
Query: 547 DEINLEAGAEVRKDIDV 597
D +LE E RKD ++
Sbjct: 207 D--SLEKLCE-RKDEEI 220
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/88 (21%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +1
Query: 280 LYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQS 459
L + + +KRLT+ E+ + +++ ++ + LTS + TE+++++ + S
Sbjct: 277 LEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENS 336
Query: 460 LKMAKEAIANLERDLQKM-DTKSSPKSA 540
L+ +E ++ +LQ + + K++ SA
Sbjct: 337 LRELQEKYDSVVSELQVVKENKNTSVSA 364
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 361 DEEAALTSTGMGRSTTTEDIDDHLMSE-EDMKQSLKMAKEAIANLERDLQKMDTK 522
+ + L + + + ED HL E D+KQ + + LERD++ +D+K
Sbjct: 27 ESTSVLYTIDLDMESDVEDAFFHLDRELHDLKQQISSQSKQNFVLERDVRYLDSK 81
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 7.5
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +1
Query: 226 RSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRST 405
+S H+ K ++ Y L + SD + L + ++ N+ + + +A + S ++
Sbjct: 163 KSAHSTKTVVDALYKSY-LEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITS 221
Query: 406 TTEDIDDH--LMSEEDMKQSLKMAKEAIANLE 495
I++ L+SEE+ +SLK + I+NLE
Sbjct: 222 LESLIEEQKKLLSEEE--ESLKSVESIISNLE 251
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/90 (18%), Positives = 35/90 (38%)
Frame = +1
Query: 79 PAQLGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIV 258
PA++ H ++ +T D + E++ L L +++ + + K P+
Sbjct: 796 PAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEK 855
Query: 259 KKKIGYHLYRDSDEEKRLTSSRENCNEKVK 348
KK+ Y +E +S+ VK
Sbjct: 856 PKKLRKDRYASVEEFDYFSSTEHASKRSVK 885
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +1
Query: 274 YHLYRDSDEEKRLTSSRENCNEKVKVKL--CDEEAALTSTGMGRSTTTEDIDDHLMSEE- 444
Y LY + S + C + V + C E L TG G+ + + DH + +E
Sbjct: 492 YALYSGWPGDPTFRKSNDVCIALIGVSIIACGIEFLLDKTGFGQFNASFNNHDHEVEDEQ 551
Query: 445 ---DMKQSLKMAKEAIA 486
D+K +L +++A A
Sbjct: 552 EMTDIKPALPSSQQADA 568
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 620 ICSSASFATSISLRTSAPASKLISSICADFGLDLVSIFCRSLSR 489
+ S +SI+ +S L++ C DFG+ +V + R + R
Sbjct: 523 LIDSLDVGSSITHAIYQHSSDLVAVACDDFGIRIVDVQTRKIVR 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,382
Number of Sequences: 5004
Number of extensions: 44922
Number of successful extensions: 152
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -