Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m20
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 1.5
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 26 2.5
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 26 3.4
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 3.4
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 4.5
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 25 4.5
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 25 4.5
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 5.9
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 25 7.8
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.8
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 23.8 bits (49), Expect(2) = 1.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 388 AICLYYVYYRNIPSCTKH 441
A+CL +++RN +C K+
Sbjct: 75 AVCLMNIFFRNSENCFKY 92
Score = 21.8 bits (44), Expect(2) = 1.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +1
Query: 199 LPTVVVIFLLICVYVYIKTRPSTMHD 276
L + ++FLL+ Y++ + MHD
Sbjct: 27 LSLIGIVFLLVLSYLFSIEAETLMHD 52
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 366 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 247
H +SQ KP E NVY ++KL + R SRFN
Sbjct: 8 HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 366 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 247
H +SQ KP E NVY ++KL + R SRFN
Sbjct: 8 HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 3.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 166 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 261
+K+ K + + + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 142 KRERKQEFAKMRKQIHTIVLPTVVVIFLLIC 234
KRE ++F+K+ K+I I T V +++C
Sbjct: 639 KREFHKDFSKLYKEILDIFNSTTVNFLMILC 669
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 115 GPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVY 240
GP ETA ER+QEF + I++++ + V+ + + +
Sbjct: 62 GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 356 PNHNLKNHPQNKSRMYILFT**SYCYASCIVDGRVLMYTYTQINKNITTTVGNTIV 189
P+ NL N + R I SCI+ R L+ YT++ + V NTI+
Sbjct: 297 PDSNLLNQTFSYQRHQIYKEEDVVLARSCIIKARTLIGAYTKVGD--ASVVANTII 350
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 450 HLDMLGTTWNVSVINIV*TYSTKSLTCYHIESQSQ 346
H D++ W S+ T TK LTC +I S+ +
Sbjct: 221 HSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDE 255
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 319 DLFWGWFFKL*LGLNVVASERLCAICLYYVY-YRNIP 426
D+ W + LG+ + +C YY+Y Y+ IP
Sbjct: 441 DILATWKLLVALGMTPILYSFYALLCCYYIYSYKLIP 477
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 358 LNVVASERLCAICLYYVYYRNIPSCTKHIKVLFNKNI 468
L ++A R C C Y+++ P+ K L N NI
Sbjct: 9 LTLLAVRRFCGPCRRLHYHKDNPNNINIAKNLLNNNI 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,684
Number of Sequences: 5004
Number of extensions: 40893
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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