Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m20
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.85 
SB_4141| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   2.1  
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)                 29   2.6  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 28   3.4  
SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   3.4  
SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_2238| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)                  28   4.5  
SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   6.0  
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)                 27   6.0  
SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054)                   27   7.9  
SB_32262| Best HMM Match : CHAD (HMM E-Value=6.1)                      27   7.9  
SB_10352| Best HMM Match : 7tm_1 (HMM E-Value=0.001)                   27   7.9  
SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +1

Query: 118  PVKETARQKRERKQEFAKMRKQIHTIVLPTVVVI-FLLICVYVYIKTRPSTMHDA*Q*LY 294
            P K   +++ E+ +   +M++++   V   V+ + +L I + V   +R   MH     L+
Sbjct: 2529 PPKPPTKEQLEKSRRLHRMKQEMFAWVKEVVIFVGYLCILLVVAHGSRSQWMHPIKSSLF 2588

Query: 295  YV-----NRIYILDLFWGW 336
                   N +   D FWGW
Sbjct: 2589 QTTADNDNMLTSFDKFWGW 2607


>SB_4141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 25.4 bits (53), Expect(2) = 2.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 398 KHIAQSLSLATTLSPNHNLKNHPQNKS 318
           KH  Q  +L TT + N N  N  +NK+
Sbjct: 56  KHPPQKTTLTTTKNTNRNNNNESRNKT 82



 Score = 22.2 bits (45), Expect(2) = 2.1
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 254 VLMYTYTQINKNITTTVGNTIVCICFRIFANSCFLSL 144
           VL Y     NK+  TT+  T+  +    F  S  L +
Sbjct: 117 VLFYFSGSRNKHKITTIATTVTLVALLNFNRSILLQM 153


>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 130 TARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVYVYIK 252
           TAR+KR      + MR + +      VVV+F+ +C+ + +K
Sbjct: 35  TAREKRLPSNTASAMRTRSNFRCPAYVVVVFVFVCIVIMVK 75


>SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)
          Length = 375

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 199 LPTVVVIFLLICVYVYIKTRPST 267
           +P V+++   +C+Y+  + RPST
Sbjct: 191 IPFVIIVTAYVCIYIAARARPST 213


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 206 VGNTIVCICFRIFANSCFLSLFCL 135
           VG     ICF +F  SC++SLF L
Sbjct: 87  VGEITCRICFSVFYLSCYVSLFSL 110


>SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 492

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -1

Query: 374 LATTLSPNHNLKNHPQNKSRMYILFT**SYCYASCIVDGRV------LMYTYTQINK 222
           L T LSP + + N P+ +S ++   T  +Y Y S +  GR       L  TYT  NK
Sbjct: 161 LFTRLSPTYTVPNKPRKESILFTRLT--TYIYCSLLGPGRESLLSTRLTLTYTVPNK 215


>SB_26930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1533

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 328  WGWFFKL*LGLNV-VASERLCAICLYYVYYRNI 423
            W   F++  G  V V +ER CA   Y +Y+RN+
Sbjct: 1199 WTTDFRIIFGPKVLVRNERFCASLQYEIYHRNV 1231


>SB_2238| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
          Length = 271

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 352 LGLNVVASERLCAICLYYVYYRNI 423
           LGL ++A ER+CAI +Y + +RN+
Sbjct: 85  LGLQLIALERMCAI-VYPIRHRNL 107


>SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 173 IFANSCFLSLFCLAVSLTGPFS-FLIFNANKSAKINKNMY 57
           ++  + FLS  CL +SLTG  S F+I   N++ +   N +
Sbjct: 16  LYTEAIFLSFICL-ISLTGNLSLFIIVLRNRNLRTRSNWF 54


>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
          Length = 827

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 81  GFVSIEDEEAEGSRQRDS*AEKGKKTRIRENAKTNT 188
           G  S+ D EA    + +   EK K TR+ +N  TNT
Sbjct: 767 GSYSVIDAEALNREELEREREKEKATRLGDNTPTNT 802


>SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054)
          Length = 305

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 100 MRKLKGPVKETARQKRERKQ-EFAKMRKQIHTIVL 201
           +R+L+  + E  R+KRER + +  K+R QIHT+ L
Sbjct: 228 IRELEAQL-EYEREKRERLEAQMDKLRAQIHTMTL 261


>SB_32262| Best HMM Match : CHAD (HMM E-Value=6.1)
          Length = 402

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 223 KILQRQLVTQSYVFVFAFSRI 161
           K+L R LV + Y FVFA++ I
Sbjct: 91  KLLSRGLVVKRYAFVFAYTNI 111


>SB_10352| Best HMM Match : 7tm_1 (HMM E-Value=0.001)
          Length = 220

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 112 KGPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVYVYI 249
           +G  ++  R++R R  E      ++ ++VL   ++ +   CV VY+
Sbjct: 89  QGKRRQNGRERRRRNSELQDRLTRVFSLVLIAYLICYGPSCVMVYL 134


>SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 87  VSIEDEEAEGSRQRDS*AEKGKKTRIRENAKTNTYDCVTNCRCNIFIN 230
           + I+  + E ++ R       K TR+ + A +NT  C+T+   +I  N
Sbjct: 5   LQIKQHDCERTKVRMLRVSSDKSTRVTDKATSNTATCITDKATSITDN 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,519
Number of Sequences: 59808
Number of extensions: 306321
Number of successful extensions: 870
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)