Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m19
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 28 1.1
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 27 1.5
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 27 2.0
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 2.0
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 3.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 3.4
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 26 4.5
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 4.5
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 6.0
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 6.0
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 6.0
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 430 KKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDEFDMV 543
+K KEID Y+R S + A Y N + P E M+
Sbjct: 36 QKQKEIDENYHRQESLIESAKIAYLNTKNTPPKEDSML 73
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 319 TNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYY 459
T +S + SV + ++KES ++ Y++ F+N ++ KEI +Y
Sbjct: 557 TKAKSAVETGSVPWSKIKESTSDIFYELTSMKFENPNEGEKEIVEHY 603
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 142 LLRSFINILGAILSTSSQPQRPQEQPTQKEKTGFNRSSRAPESKCKEGISD 294
+ ++F++ L + + T S R ++ K+ G N + ESK E +SD
Sbjct: 136 MAKNFLSNLASRIQTESAQFRKKQSTYLKKLRGLNANISPVESKLDETVSD 186
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 220 TQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYK 399
TQ E+ R +P + GIS Y P + L+S L DI ++ ++ES E+
Sbjct: 13 TQFEELMKKRFFFSPSFQIYGGISGLYDYGPPGSALQSNLVDIWRKHFVIEESMLEVDCS 72
Query: 400 VL 405
+L
Sbjct: 73 ML 74
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 250 SSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLH 429
SS P+S+ E S P+IT+L R +L ++ H L +F N+H
Sbjct: 91 SSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIH 150
Query: 430 KKMK 441
++++
Sbjct: 151 RELE 154
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 322 NLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSTVHH 486
NL+ +AD+S + ++L+ +LH +L+ + NL + + D N+ S H
Sbjct: 460 NLQREIADLSEQIVELESKRNDLHSALLE-MGGNLTSLLTKKDSIANKISDQSEH 513
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 26.2 bits (55), Expect = 3.4
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +1
Query: 337 LADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDP-------YYNRYSSTVHHAGS 495
L D S Y + K + + D+ QN+ + +KEI P N S++V+ A
Sbjct: 38 LHDQSKNYDEFKNNVLSCGGEFTDSFLQNISRLIKEIKPKDDIPTDNVNNGSNSVNGASH 97
Query: 496 HYDNVRINKPDEFDMVIEIGVP 561
D+ ++K + M + +P
Sbjct: 98 DLDSKDVDKQHQRKMFPGLSIP 119
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 436 MKEIDPYYNRYSSTVHHAGSHYDNVRINKPDE 531
+KE+ P+++ S+ + G D+ I+K DE
Sbjct: 96 LKELKPFHSTLSAFTNETGGIIDDTIISKQDE 127
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 4.5
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +1
Query: 205 PQEQPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDF 384
PQE + S P + E +S+ VP++P+ +N ++ I++ E
Sbjct: 103 PQEYSEFSVASPQTISPSLPLNLDDETVSENVPHSPQSSN-------DAIPVIKITE--- 152
Query: 385 ELHYKVLDTIFQNLHKKMK 441
E ++V DT++ LHK K
Sbjct: 153 ENSFRVKDTLYVGLHKDQK 171
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 253 SRAPESKCKEGISDKVPYNPKITNLES 333
S P +EGI D +P NP N+ S
Sbjct: 609 SDLPPDSVREGIKDVLPINPHTGNIYS 635
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 6.0
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 344 SASRDSKLVIFGL*GTLSLIPSLHFDSGALLLLLKPVFSFCVGCSCGRCGCDEVDN 177
+A +D K +I L LS++ L+ +SGALL L +F G+ E DN
Sbjct: 573 NAEKDGKDLISWL-PDLSILYKLYSESGALLNLYDWYIAFSEHLQAGKENLKEDDN 627
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 6.0
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 166 LGAILSTSSQPQRPQE--QPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLL 339
L + S SQP+ E Q + +E+ N + ESK K + D + + LL
Sbjct: 157 LSFVASKPSQPEGNLEDIQTSSQEEEHDNEKDKTKESKAKGFLDDLSGLSASSLHNYQLL 216
Query: 340 ADISVRYIQLKESDF 384
+ +VR + DF
Sbjct: 217 KNPNVRNSTTQNQDF 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,486
Number of Sequences: 5004
Number of extensions: 40222
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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