Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m19
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 31 0.87
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222... 29 2.7
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 29 2.7
01_01_0473 - 3478660-3480338,3480507-3480609 29 3.5
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 28 6.1
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 27 8.1
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 385 ELHYKVLDTIFQNLHKKMKEIDPYYNRYSSTVHH 486
++ YK L+T++ + ++K K++D YY V H
Sbjct: 42 QVSYKGLETLYDDGYQKAKDLDYYYRSLGELVEH 75
>07_03_0337 +
16918613-16919078,16921610-16921725,16922039-16922208,
16922509-16922602,16923371-16923457,16923529-16923609,
16923800-16923925,16924541-16924649,16924723-16924802,
16925401-16925529,16925605-16925705,16926075-16926208,
16926307-16926404,16926488-16926607,16927008-16927022,
16927930-16927957,16928066-16928118,16928446-16928517,
16928605-16928652,16928928-16929033,16929110-16929168,
16929792-16929887,16929942-16929959
Length = 801
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +1
Query: 169 GAILSTSSQPQRPQEQPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADI 348
GA S + + Q + +KE ++ +A E+ + + K+ +L + L
Sbjct: 97 GAAESELVKGLKEQVERLRKEVEEHKQTQKATEAALEHVNVAYAEADAKVQDLTAKLTQA 156
Query: 349 SVRYI-QLKESDFELHYKVLDTIFQNLHKKMKE 444
+ +LKE D + Y LDT FQ LHK+ K+
Sbjct: 157 QQKMDKELKERDEK--YVELDTKFQRLHKRAKQ 187
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Frame = +1
Query: 178 LSTSSQPQRPQEQPTQKEKTGFNRSSRAPESK-----CKEGISDKVPYNPKITNLESLLA 342
L T P P+ P+++ + N + R K I VPY+ + + S+ +
Sbjct: 365 LCTHRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYS-EWRCMMSIFS 423
Query: 343 DISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYY 459
D+ +++ DF ++ K D QNL K ++ Y
Sbjct: 424 DMIEEIVEVFVDDFSVYGKTFDHCLQNLDKVLQRCQEKY 462
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Frame = +1
Query: 136 ESLLRSFINILGAILSTSSQPQRPQEQPTQ------KEKTGFNRSSRAPESKCKEGISDK 297
+ L + ++ G + ST SQ Q+ + ++ K+ + N++ E+K + S+K
Sbjct: 420 QKLKEANASLEGKLTSTESQLQQLHAEKSEASISSEKQISDLNQAIADLETKLELLSSEK 479
Query: 298 VPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTI 414
+ K+ SLL D++ R +++E D LH L+ +
Sbjct: 480 TTVDNKVA---SLLTDVTARDEKIREMDSHLHQLHLEHV 515
>01_06_1645 +
38884606-38884777,38885509-38885567,38885933-38886114,
38886559-38886634
Length = 162
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 475 CSNICCSMDLFLSFSCEDFGILYLALCN 392
CS +C + F + CE+ G LALC+
Sbjct: 18 CSVLCLGAERFGARECEELGFTGLALCS 45
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 202 RPQEQPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLK--- 372
+P ++ ++R ++AP + +SD PY + +L S + ++ +R ++L+
Sbjct: 655 KPDHSYGRRGHDSYDRQAKAP--RLYNEVSDTDPYEAAVVSLPSAVKELLLRILRLRIGT 712
Query: 373 ESDFELH 393
D ++H
Sbjct: 713 RYDIDIH 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,516,201
Number of Sequences: 37544
Number of extensions: 224116
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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