Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m19
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12) 35 0.055
SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3) 35 0.055
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018) 30 1.2
SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2) 29 2.1
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4) 27 8.3
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 27 8.3
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_41709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +1
Query: 289 SDKVPYNPKI-TNLESLLADISVRY-IQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYN 462
+DKV N + ++L L ++ ++ + L++ + K ++ I KK+ D
Sbjct: 61 TDKVLKNARCRSHLNHYLDELDRKFSVDLRDQEVINIRKDMEYIASQFAKKVACHDA--- 117
Query: 463 RYSSTVHHAGSHYDNVRINKPDEFDMVIEI 552
R+ + ++GSHY+ ++++ PDEFD +IEI
Sbjct: 118 RFKGEILNSGSHYEGLQVSAPDEFDYMIEI 147
>SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)
Length = 364
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 418 QNLHKKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDEFDMVIEI 552
Q + K ++E + YY + GS+Y+ ++ PDEFD++IEI
Sbjct: 36 QKILKFVEERNTYYK--FDRLLMTGSYYERAKVKNPDEFDLMIEI 78
>SB_19235| Best HMM Match : Mad3_like (HMM E-Value=7.3)
Length = 100
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 418 QNLHKKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDEFDMVIEI 552
Q + K ++E + YY + GS+Y+ ++ PDEFD++IEI
Sbjct: 36 QKILKFVEERNTYYK--FDRLLMTGSYYERAKVKNPDEFDLMIEI 78
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 31.1 bits (67), Expect = 0.67
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 199 QRPQEQPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKES 378
Q+ + +P Q+E N S A K E + + + NL+ +ADIS R+ +LK
Sbjct: 3667 QKTEHEPMQQEILN-NEPSYAALMKAGESLKEASQSAEEQDNLDEKVADISRRWDELKSK 3725
Query: 379 DFELHYKVLDTI-----FQNLHKK 435
E + D I FQNL K
Sbjct: 3726 SNERSSLLDDAISAVAEFQNLRDK 3749
>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1603
Score = 30.7 bits (66), Expect = 0.89
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 292 DKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYS 471
D++P +T LESL ++ R +ES+ K LDT +L K + + Y+ R
Sbjct: 627 DRIPLQMALTQLESLADNLKER---KRESELRSRVKQLDTATAHLSKPLSSGNRYFIRQD 683
Query: 472 STV 480
V
Sbjct: 684 DFV 686
>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 30.7 bits (66), Expect = 0.89
Identities = 26/103 (25%), Positives = 41/103 (39%)
Frame = +1
Query: 220 TQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESDFELHYK 399
TQ EK +S + + + +E DK N E + S ++++ L Y
Sbjct: 43 TQVEKRTEAKSDISKDDQTRENDDDKTAIQAHQYNKEKKVTKTSPP-VRVRFKTIILRYA 101
Query: 400 VLDTIFQNLHKKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPD 528
V D Q+ H ++ P Y S + A H D +NK D
Sbjct: 102 VWD---QDEHGTFRKQFPLYTNLQSDRYDARCHGDKFAVNKSD 141
>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
Length = 786
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 175 ILSTSSQPQRPQEQPTQKEKTGFNRSSRAPESKCKEGISD 294
+LS + P Q + +TG + S R+PE K + ISD
Sbjct: 4 LLSITGTPTAKQPKTVAHPRTGSSSSQRSPEKKMQHDISD 43
>SB_19389| Best HMM Match : ABC1 (HMM E-Value=2.2)
Length = 340
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 490 GSHYDNVRINKPDEFDMVIEI 552
GS Y+ ++I PDEFD +IE+
Sbjct: 140 GSTYEMLKIGMPDEFDFMIEL 160
>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 343 DISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSTVHHAGSHYDNVR 513
D + Y ++E+ + +HY + + N+H Y N + +H+ HYDN++
Sbjct: 9 DRTAIYANIREALYNIHYDNIH--YDNIH--------YDNIHYDNIHYDNIHYDNIQ 55
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 393 LQSARYNIPKSSQENERNRSILQQIFEHGTSCRESLRQCAYKQTR*IRHGYRNRCASLL 569
LQS RYNIP S+ ++E ++C R + Q + + +R++C ++
Sbjct: 742 LQSCRYNIPFFSEN-------YGPVYEEMSTCAHEARPGHHTQVQGLEEHFRDKCGGVI 793
>SB_3893| Best HMM Match : PaREP8 (HMM E-Value=2.4)
Length = 339
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +1
Query: 163 ILGAILSTSSQPQRPQEQPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLA 342
+L +ST+SQP +PQ T+ EK A KC++ + + K +N E++++
Sbjct: 263 LLNPEVSTTSQPSQPQPY-TEGEKI-------AKHEKCEQKREENMSKFAKRSNTETVMS 314
Query: 343 DISVRYIQLKES 378
RY+Q K++
Sbjct: 315 -ARERYLQRKKA 325
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +1
Query: 346 ISVRYIQLKESDFELHYKVLDTIFQNLHK------KMKEIDPYYNRYSSTVHHAGSHYDN 507
I VR++ + ++H+ + + +H +K PY NR S V H ++ +
Sbjct: 257 IKVRHLYVNRVSIKVHHPYANRVSIKVHHPYANRVSIKVRHPYANRVSIKVRHPYANPVS 316
Query: 508 VRINKPDEFDMVIEIGVP 561
+++ P + M I++ P
Sbjct: 317 IKVRHPYDDRMSIKVRHP 334
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 253 SRAPESKCKEGISDKVPYNPKITNLESLLADIS-----VRYIQLKESDFELHYKVLDTIF 417
S+ + K +G + + +LE AD+S +R + + SD ++ + +
Sbjct: 210 SKVLKDKLYKGAAAAESAGQNLLSLEGPDADLSGVDEELRALNERVSDLKVRLSAFEEHY 269
Query: 418 QNLHKKMKEIDP 453
QNLH++M++ P
Sbjct: 270 QNLHREMEQARP 281
>SB_662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/55 (23%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Frame = +1
Query: 292 DKVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQN--LHKKMKEID 450
+K+ + +I +LES+++D QLK ++ +L ++ ++ +N L +++K+++
Sbjct: 240 EKMAFEGRIIHLESMVSDKDEEISQLKGTNADLSSQIKESKVKNQELEQRVKDLE 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,596
Number of Sequences: 59808
Number of extensions: 285885
Number of successful extensions: 978
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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