Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m19
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 181  STSSQPQRPQEQPTQKEKTGFNRSSRAPESK 273
            S  +Q Q+PQ+Q  Q+++    + S+ P+ +
Sbjct: 1497 SQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQ 1527



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 193  QPQRPQEQPTQKEKTGFNRSSRAPESKCKE 282
            Q Q+PQ+Q  Q ++    +  + P+ + KE
Sbjct: 1520 QSQQPQQQQPQPQQQQQQQQQQQPQQQQKE 1549



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 187  SSQPQRPQEQPTQKEK 234
            +S PQ+PQ+Q  Q+++
Sbjct: 1444 TSAPQQPQQQQQQQQQ 1459


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 138 IVAPIFHQHFGSNIINLITTAASARTTNAKRKNG 239
           ++AP FH +   + I+L    A +     +++NG
Sbjct: 140 LIAPTFHLNVLKSFIDLFNANARSVVEKMRKENG 173


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 128 IILNRCSDLSSTFWEQYYQPHH 193
           I+  RCS+L+    E++YQ  +
Sbjct: 441 ILYFRCSNLNHMMREEFYQSQY 462


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 476 RYIMPGVTTTMCV*TNPMNSTW 541
           RY  P  T  M +  N  N TW
Sbjct: 376 RYFYPNGTEKMTLSVNESNITW 397


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 224 CVGCSCGRCGCDEVDN 177
           C+GCS  +  C +  N
Sbjct: 90  CIGCSAEKFECSKTSN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,992
Number of Sequences: 438
Number of extensions: 2969
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)