Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m19
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04030.1 68414.m00390 expressed protein 30 0.96
At1g09240.1 68414.m01031 nicotianamine synthase, putative simila... 30 1.3
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 28 3.9
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 28 3.9
At1g68790.1 68414.m07863 expressed protein 28 3.9
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 28 5.1
At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate 5-ki... 28 5.1
At1g06260.1 68414.m00662 cysteine proteinase, putative contains ... 28 5.1
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 27 6.8
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 27 6.8
At5g10150.1 68418.m01175 expressed protein 27 6.8
At1g77740.1 68414.m09051 1-phosphatidylinositol-4-phosphate 5-ki... 27 6.8
At1g14130.1 68414.m01670 2-oxoglutarate-dependent dioxygenase, p... 27 6.8
At4g35070.1 68417.m04978 expressed protein 27 9.0
>At1g04030.1 68414.m00390 expressed protein
Length = 418
Score = 30.3 bits (65), Expect = 0.96
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 358 YIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYYNRYSSTVHHAGSHYDNVRINKPDE 531
Y + S+ LH + Q++ K +EID R + TV G+HYD + P E
Sbjct: 153 YSDVGFSEDSLHNPTKEVYTQDIGDKTEEIDSKLRRSNETVRD-GNHYDGQGVLNPVE 209
>At1g09240.1 68414.m01031 nicotianamine synthase, putative similar
to nicotianamine synthase [Lycopersicon
esculentum][GI:4753801], nicotianamine synthase 2
[Hordeum vulgare][GI:4894912]
Length = 320
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +1
Query: 277 KEGISDKVPYNPKI--TNLESLLADISVRYIQ---LKESDFELHYKVLDTIFQNLHKKMK 441
K+ +S +P NP I T + + +I + I+ L E E H+ + T +Q+
Sbjct: 36 KQLVSTCIPPNPNIDVTKMCDRVQEIRLNLIKICGLAEGHLENHFSSILTSYQDNPLHHL 95
Query: 442 EIDPYYNRY 468
I PYYN Y
Sbjct: 96 NIFPYYNNY 104
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 295 KVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQN-----LHKKMKEI--DP 453
KV NPK + + I+ + ++E+ F + ++ D++F N L K + +
Sbjct: 579 KVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTER 638
Query: 454 YYNRYSSTVHHAGSH 498
+Y+R S GSH
Sbjct: 639 FYDRQSDNPLSIGSH 653
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 295 KVPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTIFQN-----LHKKMKEI--DP 453
KV NPK + + I+ + ++E+ F + ++ D++F N L K + +
Sbjct: 579 KVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTER 638
Query: 454 YYNRYSSTVHHAGSH 498
+Y+R S GSH
Sbjct: 639 FYDRQSDNPLSIGSH 653
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 202 RPQEQPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADISVRYIQLKESD 381
R E+ +Q+E N + + + + +E +K+ LE ISVR LKE +
Sbjct: 630 RTYEKRSQEELDNINYTKKLAQREMEEMQYEKLA-------LEREREQISVRKKLLKEQE 682
Query: 382 FELHYKV--LDTIFQNLHKKMKE 444
E+H + LD + +L +K KE
Sbjct: 683 AEMHKDITELDVLRSSLKEKRKE 705
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 408 YNIPKSSQENERNRSILQQIFEHGTSCRESLRQCAYKQ 521
YN+PKS + NR ++ + T + +RQ + Q
Sbjct: 718 YNLPKSMNPKQLNRLLVDAVTSRATKQKPCIRQIKFLQ 755
>At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate
5-kinase, putative / PIP kinase, putative /
PtdIns(4)P-5-kinase, putative / diphosphoinositide
kinase, putative strong similarity to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 752
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -1
Query: 269 DSGALLLLLKPVFS-FCVGCSCGRCG---CDEVDNIAPKMLMKDR 147
DSGA L + VF C+ S G G CD +DN+ M+ +DR
Sbjct: 275 DSGAGSLGGEKVFPRICIWESDGEAGDITCDIIDNVEASMIYRDR 319
>At1g06260.1 68414.m00662 cysteine proteinase, putative contains
similarity to thiol-protease, pre-pro-TPE4A protein
GI:3688528 [Pisum sativum]
Length = 343
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 355 RYIQLKESDFELHYKVLDTIFQNLHKKMKEI-DPYYN 462
R+ + S+F+ H+ L+T LHKK + + DP N
Sbjct: 90 RFADMTNSEFKAHFLGLNTSSLRLHKKQRPVCDPAGN 126
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 445 IDPYYNRYSSTVHHAGSHYDNVRINKPD 528
+DPY+NR +S + H + + KPD
Sbjct: 416 VDPYFNRITSKMKHCDEEVTEIEV-KPD 442
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 445 IDPYYNRYSSTVHHAGSHYDNVRINKPD 528
+DPY+NR +S + H + + KPD
Sbjct: 416 VDPYFNRITSKMKHCDEEVTEIEV-KPD 442
>At5g10150.1 68418.m01175 expressed protein
Length = 414
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 211 EQPTQKEKTGFNRSSRAPESKCKEGIS-DKVPYNPKITNLESLLADISVR 357
E +EKT + SS P+S+C G+S + + + NL D+ VR
Sbjct: 189 EYELYEEKTSYT-SSTTPQSRCSRGVSTETMESTEQKPNLTKTEQDLQVR 237
>At1g77740.1 68414.m09051 1-phosphatidylinositol-4-phosphate
5-kinase, putative / PIP kinase, putative /
PtdIns(4)P-5-kinase, putative / diphosphoinositide
kinase, putative strong similarity to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 754
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -1
Query: 269 DSGALLLLLKPVFS-FCVGCSCGRCG---CDEVDNIAPKMLMKDR 147
DSGA L + +F C+ S G G CD VDN+ ++ +DR
Sbjct: 277 DSGAGSLTGEKIFPRICIWESDGEAGDITCDIVDNVEASVIYRDR 321
>At1g14130.1 68414.m01670 2-oxoglutarate-dependent dioxygenase,
putative similar to adventitious rooting related
oxygenase ARRO-1 from Malus x domestica, gi|3492806;
contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
superfamily
Length = 308
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 331 SLLADISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYY 459
SL+A++ I L + +E+ + D + + ++ EI+PYY
Sbjct: 46 SLMAEMKKTVIDLFQRPYEVKVRNTDVLLGSGYRAPNEINPYY 88
>At4g35070.1 68417.m04978 expressed protein
Length = 265
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 481 VPCSNICCSMDLFLSFSCEDFGILYLALCN 392
+PC ++CC MD CE+ G+L +CN
Sbjct: 231 LPCRHLCCCMD------CEE-GLLLCPICN 253
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,592,785
Number of Sequences: 28952
Number of extensions: 195248
Number of successful extensions: 677
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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