Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m18
(364 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep: S... 71 6e-12
UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n... 64 7e-10
UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protei... 56 2e-07
UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37; Eukary... 52 4e-06
UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4; Magnoli... 52 4e-06
UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2; Tr... 51 5e-06
UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|R... 50 1e-05
UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=... 49 3e-05
UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30; Eukary... 46 3e-04
UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, wh... 44 0.001
UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing... 42 0.003
UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n... 40 0.010
UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiell... 39 0.031
UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n... 38 0.055
UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2; ... 37 0.13
UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2; Thermoprot... 36 0.17
UniRef50_Q9Y9T9 Cluster: 30S ribosomal protein S30; n=2; Thermop... 35 0.39
UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146... 35 0.51
UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to UBIQUITIN-... 34 0.67
UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza sa... 34 0.67
UniRef50_Q8ZV51 Cluster: Ribosomal protein S30; n=11; Thermoprot... 34 0.67
UniRef50_Q7SBJ3 Cluster: Putative uncharacterized protein NCU061... 31 6.3
UniRef50_Q9KXJ2 Cluster: Putative dipeptidase; n=2; Streptomyces... 31 8.3
>UniRef50_Q4KTB1 Cluster: S30-ubiquitin-like; n=4; Metazoa|Rep:
S30-ubiquitin-like - Suberites domuncula (Sponge)
Length = 134
Score = 70.9 bits (166), Expect = 6e-12
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Frame = +3
Query: 75 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXX 254
MQ+ ++G + H ++V+ + + Q+K + + ED LS G P
Sbjct: 1 MQVFVQGGALHAINVSEETTFNQLKSELVLSEGITVEDQVLSYGGVPLEDDTLVCEIVPE 60
Query: 255 XXXXT--VPLLGGKVHGSLARAGKVKGQTPKVEKQQKK 362
+ V ++GGKVHGSLARAGKV+GQTPKVE Q+KK
Sbjct: 61 LATLSLAVRVVGGKVHGSLARAGKVRGQTPKVEAQEKK 98
>UniRef50_UPI0000F33F66 Cluster: UPI0000F33F66 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F33F66 UniRef100 entry - Bos
Taurus
Length = 128
Score = 64.1 bits (149), Expect = 7e-10
Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +3
Query: 84 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXXXXX 263
H + Q H L V GQE + QIK + +L +D L L G P
Sbjct: 4 HAQSQELHTLKVTGQEMVAQIKAHVASLEG---KDQVLLLAGTPLEDEVTLGQCEVEALS 60
Query: 264 XTVP---LLGGKVHGSLARAGKVKGQTPKVEKQQKK 362
+LGGKVHGSL AGKV+GQTPKV+K+ K+
Sbjct: 61 TLEVVGRMLGGKVHGSLDCAGKVRGQTPKVDKESKR 96
>UniRef50_Q18231 Cluster: Ribosomal protein, small subunit protein
30; n=3; Caenorhabditis|Rep: Ribosomal protein, small
subunit protein 30 - Caenorhabditis elegans
Length = 130
Score = 56.0 bits (129), Expect = 2e-07
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +3
Query: 276 LLGGKVHGSLARAGKVKGQTPKVEKQQKK 362
LLGGKVHGSLARAGKV+ QTPKV+KQ KK
Sbjct: 68 LLGGKVHGSLARAGKVRAQTPKVDKQDKK 96
>UniRef50_O42952 Cluster: 40S ribosomal protein S30; n=37;
Eukaryota|Rep: 40S ribosomal protein S30 -
Schizosaccharomyces pombe (Fission yeast)
Length = 61
Score = 51.6 bits (118), Expect = 4e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQK 359
GKVHGSLARAGKVK QTPKVEKQ+K
Sbjct: 2 GKVHGSLARAGKVKSQTPKVEKQEK 26
>UniRef50_P49689 Cluster: 40S ribosomal protein S30; n=4;
Magnoliophyta|Rep: 40S ribosomal protein S30 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 62
Score = 51.6 bits (118), Expect = 4e-06
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
GKVHGSLARAGKV+GQTPKV KQ KK
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKK 27
>UniRef50_A1DL63 Cluster: Ribosomal S30/ubiquitin fusion; n=2;
Trichocomaceae|Rep: Ribosomal S30/ubiquitin fusion -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 78
Score = 51.2 bits (117), Expect = 5e-06
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
GKVHGSLARAGKVK TPKVEKQ+KK
Sbjct: 2 GKVHGSLARAGKVKSATPKVEKQEKK 27
>UniRef50_P62861 Cluster: 40S ribosomal protein S30; n=74; root|Rep:
40S ribosomal protein S30 - Homo sapiens (Human)
Length = 59
Score = 50.0 bits (114), Expect = 1e-05
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = +3
Query: 288 KVHGSLARAGKVKGQTPKVEKQQKK 362
KVHGSLARAGKV+GQTPKV KQ+KK
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKK 25
>UniRef50_Q4Q7P0 Cluster: 40S ribosomal protein S30, putative; n=4;
Leishmania|Rep: 40S ribosomal protein S30, putative -
Leishmania major
Length = 66
Score = 48.8 bits (111), Expect = 3e-05
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQK 359
GK+HGSLARAGKVK QTPKV KQ+K
Sbjct: 2 GKIHGSLARAGKVKNQTPKVAKQEK 26
>UniRef50_Q9W6Y0 Cluster: 40S ribosomal protein S30; n=30;
Eukaryota|Rep: 40S ribosomal protein S30 - Oryzias
latipes (Medaka fish) (Japanese ricefish)
Length = 59
Score = 45.6 bits (103), Expect = 3e-04
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +3
Query: 288 KVHGSLARAGKVKGQTPKVEKQQKK 362
KVHGSLARAGKV+GQTP V+K ++K
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEK 25
>UniRef50_A0CN43 Cluster: Chromosome undetermined scaffold_22, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_22,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 92
Score = 43.6 bits (98), Expect = 0.001
Identities = 17/26 (65%), Positives = 24/26 (92%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
GK+HG+LA+AGKV+ QTPK+EKQ ++
Sbjct: 2 GKLHGTLAKAGKVRKQTPKIEKQVRR 27
>UniRef50_UPI0001509BA5 Cluster: Ribosomal protein S30 containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S30 containing protein - Tetrahymena
thermophila SB210
Length = 80
Score = 42.3 bits (95), Expect = 0.003
Identities = 17/25 (68%), Positives = 23/25 (92%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQK 359
G++HG+LA+AGKV+ QTPKVEK+ K
Sbjct: 2 GRMHGTLAKAGKVRKQTPKVEKKDK 26
>UniRef50_UPI0000EB013B Cluster: UPI0000EB013B related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB013B UniRef100
entry - Canis familiaris
Length = 109
Score = 40.3 bits (90), Expect = 0.010
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 75 MQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCG 209
MQL + Q H L+V GQE++ QIK + +L ++ ED + L G
Sbjct: 1 MQLFVWTQELHTLEVTGQETVTQIKTYVASLESIAPEDQVMLLAG 45
>UniRef50_Q3LW43 Cluster: Ribosomal protein S30; n=1; Bigelowiella
natans|Rep: Ribosomal protein S30 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 55
Score = 38.7 bits (86), Expect = 0.031
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
GKVHGSL RAGKV+ QT + K KK
Sbjct: 2 GKVHGSLTRAGKVRNQTKFIAKSDKK 27
>UniRef50_UPI0000EB4B7C Cluster: UPI0000EB4B7C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB4B7C UniRef100
entry - Canis familiaris
Length = 104
Score = 37.9 bits (84), Expect = 0.055
Identities = 29/86 (33%), Positives = 38/86 (44%)
Frame = +3
Query: 105 HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXXXXXXXTVPLLG 284
H L V GQE + Q+K + +L + ED + L G P LG
Sbjct: 3 HTLKVTGQEMVAQMKAHVASLEGIAPEDQVVLLAGIPLEDE---------------ATLG 47
Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
G A GKV+GQ PKV KQ+K+
Sbjct: 48 --QCGVEAPHGKVRGQAPKVAKQEKQ 71
>UniRef50_UPI00004990C9 Cluster: 40S ribosomal protein S30; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S30 - Entamoeba histolytica HM-1:IMSS
Length = 64
Score = 36.7 bits (81), Expect = 0.13
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 285 GKVHGSLARAGKVKGQTPKVEK 350
GKVHG L RAGKV+ QT K EK
Sbjct: 2 GKVHGGLTRAGKVRNQTKKPEK 23
>UniRef50_A0RV16 Cluster: Ribosomal protein S30E; n=2;
Thermoprotei|Rep: Ribosomal protein S30E - Cenarchaeum
symbiosum
Length = 60
Score = 36.3 bits (80), Expect = 0.17
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 294 HGSLARAGKVKGQTPKVEKQQK 359
HGSL +AGKV+ QTPK+E ++K
Sbjct: 4 HGSLTKAGKVRSQTPKIEGRKK 25
>UniRef50_Q9Y9T9 Cluster: 30S ribosomal protein S30; n=2;
Thermoprotei|Rep: 30S ribosomal protein S30 - Aeropyrum
pernix
Length = 50
Score = 35.1 bits (77), Expect = 0.39
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 294 HGSLARAGKVKGQTPKVEKQQKK 362
HGSL +AGKV+ QTP++ +QKK
Sbjct: 4 HGSLTKAGKVRKQTPRLPAKQKK 26
>UniRef50_A6NDN8 Cluster: Uncharacterized protein ENSP00000310146;
n=4; Euteleostomi|Rep: Uncharacterized protein
ENSP00000310146 - Homo sapiens (Human)
Length = 74
Score = 34.7 bits (76), Expect = 0.51
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 84 HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 215
++R + H L+V G E++ Q K + +L + ED + L G+P
Sbjct: 4 YVRARELHTLEVTGLETVAQSKAHVASLEGLIPEDKVVLLAGSP 47
>UniRef50_UPI00005A3817 Cluster: PREDICTED: similar to
UBIQUITIN-LIKE PROTEIN FUBI; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to UBIQUITIN-LIKE
PROTEIN FUBI - Canis familiaris
Length = 166
Score = 34.3 bits (75), Expect = 0.67
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 72 NMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 215
++QL +R H L+V G E+ IK + +L ED + L G+P
Sbjct: 16 DVQLLVRAWELHTLEVTGLEAFAHIKTHVASLEGHTTEDKVVLLAGSP 63
>UniRef50_Q7XUY7 Cluster: OSJNBb0048E02.10 protein; n=3; Oryza
sativa|Rep: OSJNBb0048E02.10 protein - Oryza sativa
subsp. japonica (Rice)
Length = 423
Score = 34.3 bits (75), Expect = 0.67
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 92 RAIDTRPGRQWPGVHWSDQGTHSYSCCSWR*RPYSIIMWS 211
+A+ RP PG+HW++Q YS CS P I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>UniRef50_Q8ZV51 Cluster: Ribosomal protein S30; n=11;
Thermoprotei|Rep: Ribosomal protein S30 - Pyrobaculum
aerophilum
Length = 55
Score = 34.3 bits (75), Expect = 0.67
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 294 HGSLARAGKVKGQTPKVEKQQKK 362
HGSL +AGKV+ QTPK+ + +K
Sbjct: 4 HGSLTKAGKVRNQTPKIPAKPRK 26
>UniRef50_Q7SBJ3 Cluster: Putative uncharacterized protein
NCU06177.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU06177.1 - Neurospora crassa
Length = 810
Score = 31.1 bits (67), Expect = 6.3
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 66 FYNMQLHIRGQSTHVLDVNGQESIGQIKERIRTLAAVGDED 188
FY+ +L+ + T +L +GQE +G+ +R+ + GD+D
Sbjct: 710 FYHTRLNKKKHDTAILGSDGQEEVGEQGQRLWSGTGKGDDD 750
>UniRef50_Q9KXJ2 Cluster: Putative dipeptidase; n=2;
Streptomyces|Rep: Putative dipeptidase - Streptomyces
coelicolor
Length = 218
Score = 30.7 bits (66), Expect = 8.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 164 STNAFLDLTNGLLAIDVQDVCRLPSDMQLHIVKSYQPSLTSKRNSDSNGGRKR 6
S AF L G+LA ++ +LP ++L V+ Y+P +R D R R
Sbjct: 43 SAGAFAHLREGVLARLLEAQAQLPPGLRLLFVEGYRPPALQRRYFDEYATRLR 95
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,831,569
Number of Sequences: 1657284
Number of extensions: 5575670
Number of successful extensions: 14551
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14548
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -