Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m18
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)           48   3e-06
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  

>SB_57861| Best HMM Match : Ribosomal_S30 (HMM E-Value=2e-32)
          Length = 61

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)
 Frame = +3

Query: 288 KVHGSLARAGKVKGQTPKVEKQQKK 362
           KVHGSLARAGKVK QTPKV+ Q+KK
Sbjct: 2   KVHGSLARAGKVKSQTPKVDAQEKK 26


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 217 KGAPHNDRVRSSSPTAARVRMRS 149
           +G+PH  R R+SSP  AR R  S
Sbjct: 729 RGSPHQPRGRASSPGGARGRAAS 751


>SB_59511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 54  WLIRFYNMQLHIRGQSTHVLDVNGQESIGQIKERIR 161
           W I  Y  + H+RG+  H  +V GQ+   + KE +R
Sbjct: 9   WGINTYRHKEHVRGRDRHKENVRGQD---RHKEHVR 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,668,114
Number of Sequences: 59808
Number of extensions: 186732
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)