Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m18
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C)            52   2e-07
At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B) RIBO...    52   2e-07
At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)            52   2e-07
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    28   2.1  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   2.8  
At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /...    26   8.6  
At3g13620.1 68416.m01714 amino acid permease family protein weak...    26   8.6  
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f...    26   8.6  

>At5g56670.1 68418.m07074 40S ribosomal protein S30 (RPS30C) 
          Length = 62

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +3

Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
           GKVHGSLARAGKV+GQTPKV KQ KK
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKK 27


>At4g29390.1 68417.m04198 40S ribosomal protein S30 (RPS30B)
           RIBOSOMAL PROTEIN S30 - Arabidopsis
           thaliana,PID:e1358183
          Length = 62

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +3

Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
           GKVHGSLARAGKV+GQTPKV KQ KK
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKK 27


>At2g19750.1 68415.m02307 40S ribosomal protein S30 (RPS30A)
          Length = 62

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +3

Query: 285 GKVHGSLARAGKVKGQTPKVEKQQKK 362
           GKVHGSLARAGKV+GQTPKV KQ KK
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKK 27


>At5g40820.1 68418.m04956 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            similar to Atr protein [Xenopus laevis] GI:11385422;
            contains Pfam profiles PF00454 Phosphatidylinositol 3-
            and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 12   PTAIAVRVSFTCQAWLIRFYNMQLHIRGQS 101
            P     R SF CQA+      ++ H+RG+S
Sbjct: 1643 PKVTLARASFRCQAYARSLMYLESHVRGKS 1672


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 84   HIRGQSTHVLDVNGQESIGQIKERIRTLAAVGD 182
            H+R QS      N   S   +K+R  TL A+G+
Sbjct: 1385 HLRSQSKQTCATNAVASPSPLKKRTSTLTAIGE 1417


>At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /
          D-fructose-1,6-bisphosphate 1-phosphohydrolase,
          putative / FBPase, putative strong similarity to
          fructose-1,6-bisphosphatase [Brassica napus] GI:289367;
          identical to SP|P25851 Fructose-1,6-bisphosphatase,
          chloroplast precursor (EC 3.1.3.11)
          (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
          (FBPase) {Arabidopsis thaliana}; contains Pfam profile
          PF00316: fructose-1,6-bisphosphatase
          Length = 417

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 77 HIVKSYQPSLTSKRNSDSNGGRK 9
          H+  S QPS+ S R+  SN G++
Sbjct: 20 HVASSSQPSILSPRSLFSNNGKR 42


>At3g13620.1 68416.m01714 amino acid permease family protein weak
           similarity to SP|Q9WTR6 Cystine/glutamate transporter
           (Amino acid transport system xc-) {Mus musculus};
           contains Pfam profile PF00324: Amino acid permease
          Length = 478

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 9   FPTAIAVRVSFTCQAWLIRFY 71
           FP A+ + V FTC A+LI  +
Sbjct: 240 FPLALLIAVIFTCVAYLIPLF 260


>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
           factor (HB-9) identical to HD-Zip protein GB:CAA71854
           GI:2145358 from [Arabidopsis thaliana]
          Length = 841

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 137 WSDQGTHSYSCCSWR*RPYSI 199
           W+D G  +YS  S R  PY++
Sbjct: 488 WADYGVDAYSAASLRATPYAV 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,323,544
Number of Sequences: 28952
Number of extensions: 123010
Number of successful extensions: 339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)