Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m16
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04) 173 9e-44
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 44 1e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 42 4e-04
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 41 7e-04
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 41 9e-04
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 38 0.008
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 37 0.015
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 36 0.019
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 36 0.025
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 36 0.025
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 36 0.025
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 36 0.034
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 35 0.059
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 35 0.059
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 34 0.078
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.078
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 33 0.18
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 31 0.55
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 31 0.96
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 30 1.3
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 25 2.0
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08) 29 3.9
SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086) 28 6.7
SB_41657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 28 6.7
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 28 6.7
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 28 6.7
SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24) 27 8.9
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 27 8.9
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 27 8.9
>SB_17568| Best HMM Match : Ldl_recept_a (HMM E-Value=0.04)
Length = 189
Score = 173 bits (421), Expect = 9e-44
Identities = 79/150 (52%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
Frame = +3
Query: 138 YFVIFCSVIIFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDCFDG 317
Y ++F +++ S + RGV+++K Y +KDFTC DG+ TIPFS VNDDYCDC DG
Sbjct: 12 YLLLFTTIVSRLGSALTL-RGVAITKLPFYDSSKDFTCLDGSLTIPFSSVNDDYCDCNDG 70
Query: 318 SDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACTNICEELGK 497
SDEPGT+AC NG FHCTNAG+RP+N PSSRVNDG+CDCCDG+DEY C + C+EL K
Sbjct: 71 SDEPGTAACPNGQFHCTNAGYRPKNYPSSRVNDGICDCCDGSDEYDGKVNCPDTCKELYK 130
Query: 498 EARAEAQRVAEL--HKAGSQLRIDLIEKRK 581
+ + + EL K LR+ L +K++
Sbjct: 131 QEFEKRRHEIELAKQKKLEDLRLQLEQKKQ 160
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 249 CFDGTATIPFSYVNDDYCDCFDGSDEP--GTSACINGVFHCTNAGHRPQNLPSSRVNDGV 422
C DG + ++ D DC DGSDE GT C + F CTN + +P + DG
Sbjct: 477 CADGNGCVHRRWICDGERDCLDGSDEAGCGTIGCSSDEFTCTN----QKCIPLPQKCDGT 532
Query: 423 CDCCDGTDEYANPT 464
+C DG+DE PT
Sbjct: 533 DNCGDGSDEKMCPT 546
Score = 36.3 bits (80), Expect = 0.019
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPG---TSACINGVFHCTNAGHRPQNLPS 401
P DFTC + +P S+ D DC D SDE G T+ C F C + + + S
Sbjct: 344 PPSDFTCANSQC-VPNSFRCDGENDCGDRSDESGCKPTTTCSANEFRCDDG----RCITS 398
Query: 402 SRVNDGVCDCCDGTDE 449
+ D DC D +DE
Sbjct: 399 TFRCDREFDCTDRSDE 414
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDE 326
+FTC IP + D DC DGSDE
Sbjct: 426 EFTCAFSGRCIPGRFRCDHRSDCLDGSDE 454
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDE---PGTSACINGVFHCTNAGHRPQNLPS 401
P +FTC +G + + ++ D DC D SDE P T+ C+ G C G + +PS
Sbjct: 2249 PAHEFTCPNGRC-VSYDFLCDGEDDCGDFSDELRCPPTT-CVPGQVKC---GSKNLCIPS 2303
Query: 402 SRVNDGVCDCCDGTDE 449
S + DG DC DG DE
Sbjct: 2304 SWLCDGSDDCGDGWDE 2319
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/71 (43%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSRVND 416
F C GT I + D DC DGSDE C N F CT+ GH N S V D
Sbjct: 2462 FRCKTGTC-ITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTS-GHCIAN---SSVCD 2516
Query: 417 GVCDCCDGTDE 449
G DC DG+DE
Sbjct: 2517 GDTDCADGSDE 2527
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP--GTSACINGVFHCTNAGHRPQNLPSS 404
P +F C +G I + D DC DGSDE G C +HC + +P S
Sbjct: 89 PKLEFQCANGRC-INKKWRCDGMKDCADGSDESTCGEGTCRPDEWHCIGTS---RCIPLS 144
Query: 405 RVNDGVCDCCDGTDE 449
RV DG DC D DE
Sbjct: 145 RVCDGTNDCGDNYDE 159
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEP--GTSACINGVFHCTNAGHRPQNLPSSRVN 413
+F C +G I ++ D DC D SDE G +C N + C+N + + S+V
Sbjct: 1091 EFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTS---RCIAKSQVC 1147
Query: 414 DGVCDCCDGTDE 449
DG DC D +DE
Sbjct: 1148 DGRVDCPDASDE 1159
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSRVND 416
F C+ IP + D DC DGSDE G C + C + + + +S V D
Sbjct: 3133 FRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASG----RCISASWVCD 3188
Query: 417 GVCDCCDGTDE 449
V DC DG+DE
Sbjct: 3189 HVNDCGDGSDE 3199
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCF--DGSDEPGTSACIN---GVFHCTNAGHRPQNLPSS 404
+F C IP S+ D DC D SDE S N +F C N +P++
Sbjct: 871 EFRCQASRKCIPLSWRCDGDYDCLAPDLSDEANCSVATNCSASMFRCANGQCKPRDW--- 927
Query: 405 RVNDGVCDCCDGTDE 449
V DG DC DG+DE
Sbjct: 928 -VCDGFDDCGDGSDE 941
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS----ACINGVFHCTNAGHRPQNLP 398
P C G IP + D DC DGSDE C F C + + +P
Sbjct: 3087 PAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCTAITCSAETFRCYS---DRRCIP 3143
Query: 399 SSRVNDGVCDCCDGTDEYANP 461
+ DG DC DG+DE P
Sbjct: 3144 NQWKCDGESDCNDGSDEKGCP 3164
Score = 37.1 bits (82), Expect = 0.011
Identities = 32/82 (39%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 216 ASLYLPTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT-SACI---NGVFHCTNAGHR 383
A L P F C +G IP S V D DC D SDEP SA I F C N
Sbjct: 43 ARLTCPPTKFLCANGMC-IPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANG--- 98
Query: 384 PQNLPSSRVNDGVCDCCDGTDE 449
+ + DG+ DC DG+DE
Sbjct: 99 -RCINKKWRCDGMKDCADGSDE 119
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--ACINGVFHCTNAGHRPQNLPSSRVN 413
+F C + IP +V D DC D SDE + C F C N H Q +
Sbjct: 1051 EFQCETSSRCIPLRFVCDADDDCGDRSDERNCTGKTCKPFEFACANGRHCIQR---KWIC 1107
Query: 414 DGVCDCCDGTDE 449
DG DC D +DE
Sbjct: 1108 DGENDCGDRSDE 1119
Score = 35.5 bits (78), Expect = 0.034
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP----GTSACINGVFHCTNAGHRPQNLP 398
P F C G I S V D DC DGSDE GTS C G+F C+ RP L
Sbjct: 2497 PNHTFKCTSGHC-IANSSVCDGDTDCADGSDEKDCDLGTSTCGAGLFRCS---CRPGYL- 2551
Query: 399 SSRVNDG-VCDCCDGTDEYANPTACTNICEEL 491
++DG C D YA C C L
Sbjct: 2552 --LMSDGRSCQDVDECKSYA-LNGCNQFCINL 2580
Score = 35.1 bits (77), Expect = 0.044
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSRVND 416
+ C G I S+V D DC DGSDE C +G F C + + + D
Sbjct: 3173 YRCASGRC-ISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDG----LCIARAWKCD 3227
Query: 417 GVCDCCDGTDE 449
G+ DC D +DE
Sbjct: 3228 GMMDCADASDE 3238
Score = 34.3 bits (75), Expect = 0.078
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSA---CINGVFHCTNAGHRPQNLPSSRVN 413
+ C D I V D C G DE + C F C N + + SRV
Sbjct: 2971 YQCADNRKCISVLEVCDGIPSCPAGDDESNCGSVNQCAPYHFRCDNF----RCVYRSRVC 3026
Query: 414 DGVCDCCDGTDE-YANPTACT 473
DG+ DC DG+DE + T CT
Sbjct: 3027 DGIDDCRDGSDERNCHVTTCT 3047
Score = 33.9 bits (74), Expect = 0.10
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEP-----GTSACINGVFHCTNAGHRPQNLPSS 404
+F C G +P S+ D DC D SDEP + C F C N + + +
Sbjct: 2332 EFRCTSGEC-VPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNG----RCISTR 2386
Query: 405 RVNDGVCDCCDGTDE 449
+ DG DC D +DE
Sbjct: 2387 LLCDGDNDCGDNSDE 2401
Score = 33.5 bits (73), Expect = 0.14
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +3
Query: 207 LSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP----GTSACINGVFHCTNA 374
LS AS + +F C G + S+V D DC DGSDE + C G F C N
Sbjct: 2163 LSNASC--ASSEFACESGQC-VRKSFVCDGDNDCHDGSDESSLVCASWTCEPGHFSCNNG 2219
Query: 375 GHRPQNLPSSRVNDGVCDCCDGTDEYANP 461
+ + + V D DC D +DE P
Sbjct: 2220 ----RCINAKWVCDRENDCGDNSDEARCP 2244
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVN-D 416
+++C + +P ++V D DC DGSDE C T + + D
Sbjct: 2418 EYSCRSTSRCVPLAFVCDGENDCGDGSDESEEQNCERATCDVTQFRCKTGTCITREWRCD 2477
Query: 417 GVCDCCDGTDE 449
DC DG+DE
Sbjct: 2478 HQDDCGDGSDE 2488
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +3
Query: 225 YLPTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT----SACINGVFHCTNAGHRPQN 392
+ P + + C + + ++ DD DC D SDE S C N F C N +
Sbjct: 3245 WCPQRLYQCINHVC-VDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNN----KC 3299
Query: 393 LPSSRVNDGVCDCCDGTDE 449
+P V DGV C D +DE
Sbjct: 3300 IPKWNVCDGVYHCTDKSDE 3318
Score = 32.3 bits (70), Expect = 0.31
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT---SACINGVFHCTNAGHRPQNLPSSRV 410
DF C D I + D DC DGSDEP + C G + C A +R + + V
Sbjct: 2930 DFMC-DNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQC--ADNR-KCISVLEV 2985
Query: 411 NDGVCDCCDGTDE 449
DG+ C G DE
Sbjct: 2986 CDGIPSCPAGDDE 2998
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPG 332
F C +G P +V D + DC DGSDE G
Sbjct: 915 FRCANGQCK-PRDWVCDGFDDCGDGSDEKG 943
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSA--CINGVFHCTN 371
F+C DG I ++ D DC D SDE G+ C ++ C N
Sbjct: 3212 FSCDDGLC-IARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCIN 3255
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEP--GTSACINGVFHCTNAGHRPQNLPSSRVN 413
+F C +G I ++ D DC D SDE G +C N + C+N + + S+V
Sbjct: 118 EFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTS---RCIAKSQVC 174
Query: 414 DGVCDCCDGTDE 449
DG DC D +DE
Sbjct: 175 DGRVDCPDASDE 186
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--ACINGVFHCTNAGHRPQNLPSSRVN 413
+F C + IP +V D DC D SDE + C F C N H Q +
Sbjct: 78 EFQCETSSRCIPLRFVCDADDDCGDRSDERNCTGKTCKPFEFACANGRHCIQR---KWIC 134
Query: 414 DGVCDCCDGTDE 449
DG DC D +DE
Sbjct: 135 DGENDCGDRSDE 146
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 41.1 bits (92), Expect = 7e-04
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT---SACINGVFHCTNAGHRPQNLPS 401
P+ F C +G IP S+ D DC D SDEP + +C +G F C+N + +
Sbjct: 11 PSNRFRCNNGRC-IPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNG----RCISR 65
Query: 402 SRVNDGVCDCCDGTDE 449
S V D DC DG+DE
Sbjct: 66 SWVCDRDNDCGDGSDE 81
Score = 28.7 bits (61), Expect = 3.9
Identities = 34/92 (36%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDE-----PGT-----------SACINGVFHCTNA 374
F+C +G I S+V D DC DGSDE P T S+C + F C N
Sbjct: 55 FSCSNGRC-ISRSWVCDRDNDCGDGSDERNCSYPTTGPWTTRPWTPISSCRSWEFSCLNG 113
Query: 375 GHRPQNLPSSRVNDGVCDCCDGTDEYA-NPTA 467
L V DGV DC D +DE + N TA
Sbjct: 114 RCVFYRL----VCDGVDDCGDSSDEMSCNATA 141
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 40.7 bits (91), Expect = 9e-04
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--ACINGVFHCTNAGHRPQNLPSSRVN 413
+F C +G I ++ DD DC D SDE G S C + F C G + + S++
Sbjct: 8 EFRCNNGRC-ITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQC---GTSRKCIRKSKIC 63
Query: 414 DGVCDCCDGTDE 449
DG DC G DE
Sbjct: 64 DGKSDCSGGEDE 75
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 39.1 bits (87), Expect = 0.003
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGV 422
FTC +G S N C DGSDE G + C F C++ + + + DG
Sbjct: 664 FTCNNGECVTKTSRCNGMRDSCVDGSDESGCT-CGLHEFQCSSG----ECIEVATFCDGK 718
Query: 423 CDCCDGTDE--YANPTACTNICEELGKE-ARAEAQRVAELHKAGSQLRIDLIEKRK 581
DC DG DE + + +CE G++ A +++ A + K LRI + RK
Sbjct: 719 KDCGDGFDETHCGSCPVSSVVCETQGRDSAESQSCNTARIRK----LRIRKLRIRK 770
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +3
Query: 303 DCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDE 449
DC DGSDE G +C + F C N + + S V D DC DG+DE
Sbjct: 105 DCRDGSDETGCGSCSSSQFRCRNG----RCVSRSWVCDKDNDCGDGSDE 149
Score = 36.7 bits (81), Expect = 0.015
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +3
Query: 234 TKDFTCFDGTATIPFSYVNDDYCDCFDGSDE-----PGTSACINGVFHCTNAGHRPQNLP 398
+ F C +G + S+V D DC DGSDE G C G + C N P+N
Sbjct: 120 SSQFRCRNGRC-VSRSWVCDKDNDCGDGSDEVQCNRAGGGWCGAGRYRCDNDRCIPRNWV 178
Query: 399 SSRVNDGVCDCCDGTDE 449
R N DC DG+DE
Sbjct: 179 CDRDN----DCGDGSDE 191
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C G S + DY +C D SDE G C C++ + +PS + DG
Sbjct: 279 EFQCTSGHCISGSSRCDSDY-NCMDSSDEDGCK-CFTNELTCSSG----RCVPSINLCDG 332
Query: 420 VCDCCDGTDE 449
V DC G DE
Sbjct: 333 VKDCEQGLDE 342
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/71 (33%), Positives = 33/71 (46%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGV 422
F C +G + ++ D DC DG+DE G C + F C N +N + N
Sbjct: 102 FKCNNGHC-VHRNWKCDGSNDCRDGTDEVGCGKCGSTQFRCRNGNCINRNYVCDKDN--- 157
Query: 423 CDCCDGTDEYA 455
DC DG+DE A
Sbjct: 158 -DCGDGSDEVA 167
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQN---LPSSRVN 413
F C +G I +YV D DC DGSDE S +NG + C +R N +P + V
Sbjct: 139 FRCRNGNC-INRNYVCDKDNDCGDGSDEVACSR-LNGGW-CGAGQYRCDNDRCIPLNWVC 195
Query: 414 DGVCDCCDGTDE 449
D + DC D +DE
Sbjct: 196 DRLNDCHDNSDE 207
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 255 DGTATIPFSYVNDDYCDCFDGSDEPG 332
D IP ++V D DC D SDE G
Sbjct: 184 DNDRCIPLNWVCDRLNDCHDNSDESG 209
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C G S + DY +C D SDE G C C++ + +PS + DG
Sbjct: 1108 EFQCASGHCISGSSRCDSDY-NCMDRSDEDGCK-CFTNELTCSSG----RCVPSINLCDG 1161
Query: 420 VCDCCDGTDE 449
V DC G DE
Sbjct: 1162 VKDCEHGLDE 1171
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C G S + DY +C D SDE G C C++ + +PS + DG
Sbjct: 198 EFQCASGHCISGSSRCDSDY-NCMDRSDEDGCK-CFTNELTCSSG----RCVPSINLCDG 251
Query: 420 VCDCCDGTDE 449
V DC G DE
Sbjct: 252 VKDCEHGLDE 261
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 36.3 bits (80), Expect = 0.019
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C +G Y + D+ C DGSDE C + +F C + + + +++ DG
Sbjct: 95 EFQCDNGKCIRKNLYCDGDFA-CVDGSDETRCE-CPSNMFLCPSG----ECIMGTQLCDG 148
Query: 420 VCDCCDGTDE--YANPTAC 470
DC D TDE A+ T C
Sbjct: 149 KKDCTDNTDEKNCAHKTEC 167
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGV 422
F C +G + DY C D SDE AC + F C + + + S+ +G
Sbjct: 43 FQCLNGMCVGQEVRCDGDYA-CVDHSDERNC-ACRSAEFKCPDG----KCVHPSKFCNGE 96
Query: 423 CDCCDGTDEYANPTACTN 476
DC DG+DE++ +C++
Sbjct: 97 SDCTDGSDEWSCDNSCSS 114
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C DG P + N + DC DGSDE + C + +L + G
Sbjct: 78 EFKCPDGKCVHPSKFCNGE-SDCTDGSDEWSCDNSCSSRHACADGTCVTWSLTCN----G 132
Query: 420 VCDCCDGTDE 449
V DC DG+DE
Sbjct: 133 VSDCQDGSDE 142
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 249 CFDGTATIPFSYVNDDYCDCFDGSDEP 329
C DGT + +S + DC DGSDEP
Sbjct: 118 CADGTC-VTWSLTCNGVSDCQDGSDEP 143
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQN---LPSSRVN 413
F C +G I +YV D DC DGSDE S +NG + C +R N +P + V
Sbjct: 5 FRCRNGNC-INRNYVCDKDNDCGDGSDEVACSR-LNGGW-CGAGQYRCDNDRCIPLNWVC 61
Query: 414 DGVCDCCDGTDE 449
D + DC D +DE
Sbjct: 62 DRLNDCHDNSDE 73
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 255 DGTATIPFSYVNDDYCDCFDGSDEPG 332
D IP ++V D DC D SDE G
Sbjct: 50 DNDRCIPLNWVCDRLNDCHDNSDESG 75
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGV 422
F C +G + DY C D SDE AC + F C + + + S+ +G
Sbjct: 43 FQCLNGMCVGQELRCDGDYA-CVDHSDERNC-ACRSAEFKCPDG----KCVHPSKFCNGE 96
Query: 423 CDCCDGTDEYANPTACTN 476
DC DG+DE++ +C++
Sbjct: 97 SDCTDGSDEWSCDNSCSS 114
Score = 35.9 bits (79), Expect = 0.025
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C DG P + N + DC DGSDE + C + +L + G
Sbjct: 78 EFKCPDGKCVHPSKFCNGE-SDCTDGSDEWSCDNSCSSRHACADGTCVTWSLTCN----G 132
Query: 420 VCDCCDGTDE 449
V DC DG+DE
Sbjct: 133 VSDCQDGSDE 142
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 249 CFDGTATIPFSYVNDDYCDCFDGSDEP 329
C DGT + +S + DC DGSDEP
Sbjct: 118 CADGTC-VTWSLTCNGVSDCQDGSDEP 143
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 35.9 bits (79), Expect = 0.025
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDE---PGTSACINGVFHCTNAGHRPQNLPSSRV 410
+FTC + I ++ D DC D SDE P + + F CTN + +P V
Sbjct: 590 EFTCVNTQKCIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNG----RCIPRRWV 645
Query: 411 NDGVCDCCDGTDEYANPTACTNICEE 488
D DC DG+DE + T C E
Sbjct: 646 CDKDDDCHDGSDE--RNSCATMTCSE 669
Score = 35.5 bits (78), Expect = 0.034
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDE---PGTSA-CINGVFHCTNAGHRPQNLPSSR 407
+FTC D + + D DC D SDE P +S C + + C+ + + S
Sbjct: 710 EFTCADKRCILSRWRCDGDR-DCADNSDEINCPNSSQYCKSSEYQCSTG----ECIHKSW 764
Query: 408 VNDGVCDCCDGTDEYANPTACTNICEE 488
V DG DC + +DE PT +IC++
Sbjct: 765 VCDGEFDCLNKSDENNCPTKPPSICKD 791
Score = 34.7 bits (76), Expect = 0.059
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEP---GTSACINGVFHCTNAGHRPQNLPS 401
P F C +G IP +V D DC DGSDE T C C N +
Sbjct: 628 PDTQFRCTNGRC-IPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNG----ICVVK 682
Query: 402 SRVNDGVCDCCDGTDE 449
V D DC DGTDE
Sbjct: 683 RWVCDQDDDCGDGTDE 698
Score = 31.1 bits (67), Expect = 0.72
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGT---SACINGVFHC------TNAGHRPQN 392
+F C IP S V D DC + +DEP + C + C T G+
Sbjct: 793 EFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGPCQHYCNDTKTGYFCSC 852
Query: 393 LPSSRVNDGVCDCCDGTDEYANPTACTNIC 482
P +V C DE A P +C+ +C
Sbjct: 853 RPGYKVALDDPKSCRDVDECAIPGSCSQMC 882
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 35.5 bits (78), Expect = 0.034
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 234 TKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPG--TSACINGVFHCTNAGHRPQNLPSSR 407
++ F C IP S+ D DC D SDE G C + F+C N Q +P S
Sbjct: 92 SRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCNN-----QCVPLSW 146
Query: 408 VNDGVCDCCDG 440
DG DC G
Sbjct: 147 KCDGEKDCRPG 157
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 35.1 bits (77), Expect = 0.044
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +3
Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPG-------TSACINGVFHCTNAGHRPQ 389
P +F C + +P +++ D DC DGSDE T C F C N+
Sbjct: 22 PRHEFEC-ENKLCVPRTWLCDGDNDCHDGSDEKNCESRRMRTVKCGIEEFDCGNS----T 76
Query: 390 NLPSSRVNDGVCDCCDGTDEYANPTAC 470
+P + + DG+ DC D +DE C
Sbjct: 77 CIPLTVLCDGLYDCADRSDESKKCEEC 103
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 34.7 bits (76), Expect = 0.059
Identities = 25/79 (31%), Positives = 33/79 (41%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C G S + DY +C D SDE G C C++ + + S + DG
Sbjct: 213 EFQCTSGHCISGSSRCDGDY-NCMDRSDEDGCK-CFTNELTCSSG----RCVQSINLCDG 266
Query: 420 VCDCCDGTDEYANPTACTN 476
V DC G DE C N
Sbjct: 267 VRDCEYGLDELRCGDGCKN 285
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 315 GSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDE 449
G D C+ G F C + G + +P S+V DG DC DG DE
Sbjct: 202 GYDPVTPPPCMPGEFKCQSTG---RCIPESKVCDGTRDCQDGEDE 243
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEP 329
+F C IP S V D DC DG DEP
Sbjct: 215 EFKCQSTGRCIPESKVCDGTRDCQDGEDEP 244
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACING 353
FTC +G +P +++ D DC D DE A I G
Sbjct: 952 FTCDNGAKCLPLTWLCDSITDCMDSKDEHNCPATIPG 988
Score = 32.7 bits (71), Expect = 0.24
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTS--------ACINGVFHCTNAGHRPQNLP 398
F C + S + D DC DGSDE C + F C N + LP
Sbjct: 906 FACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISRRDEEFGCGSDKFTCDNGA---KCLP 962
Query: 399 SSRVNDGVCDCCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKR 578
+ + D + DC D DE+ P + L + A+ A A+ K + L D + K+
Sbjct: 963 LTWLCDSITDCMDSKDEHNCPATIPG--KTLARAAQDAAVTAAQEAKRAA-LAADNMMKK 1019
Query: 579 K*EA 590
EA
Sbjct: 1020 AQEA 1023
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 34.3 bits (75), Expect = 0.078
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDG 419
+F C G S + DY +C D SDE G C C++ + +PS + DG
Sbjct: 235 EFQCASGHCISGSSRCDSDY-NCMDRSDEDGCK-CFTNELTCSSG----RCVPSINLCDG 288
Query: 420 VCDCCDGTDE 449
V DC DE
Sbjct: 289 VKDCEQDLDE 298
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +3
Query: 291 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDE 449
D Y +C DGSDE G + C F C N G + + + D + DC D +DE
Sbjct: 1366 DKYKNCTDGSDELGCATCEPNFFRC-NTG---KCISARWQCDQLDDCGDNSDE 1414
Score = 31.9 bits (69), Expect = 0.41
Identities = 22/69 (31%), Positives = 26/69 (37%)
Frame = +3
Query: 270 IPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDE 449
IP + D DC D SDE C F C N Q + D +C DG+DE
Sbjct: 1322 IPKMWRCDGMLDCTDKSDEEDCPPCKENQFRCDNG----QCIDGDPRCDKYKNCTDGSDE 1377
Query: 450 YANPTACTN 476
T N
Sbjct: 1378 LGCATCEPN 1386
>SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 486
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSA-CIN--GVFHCT-NAGHRPQNLPSSRV 410
FTC + D +C DGS A C N G F C AGH +
Sbjct: 387 FTCACNVGYTGDGHTCQDINECADGSHTCSYKATCTNTVGSFTCACKAGHTGDGHTCQDI 446
Query: 411 NDGVCDCCDGTDEYANPTACTN 476
N+ C DG+ +N CTN
Sbjct: 447 NE----CADGSHTCSNKATCTN 464
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 342 CINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACTN 476
C C N+GH Q +V D DC DGTDE +PT C +
Sbjct: 120 CTANEVRCKNSGHCVQQ---QQVCDFTDDCGDGTDE--DPTLCAS 159
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 30.7 bits (66), Expect = 0.96
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 303 DCFDGSDEPGT---SACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDE 449
DC D SDE S C F C G +P S+ DG DC GTDE
Sbjct: 47 DCADSSDEINCTKRSMCRVDQFECLIEG---DCIPLSKHCDGTWDCQHGTDE 95
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 309 FDGSDEPGT-SACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACT 473
FD +P S+C + F C ++GH + SS D DCCDG++E N T CT
Sbjct: 2771 FDNCFQPDPPSSCSSNQFRC-DSGHC---ISSSSKCDFETDCCDGSEE-RNST-CT 2820
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 318 SDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDE 449
S P C G F CT+ L +++ D V DC DG DE
Sbjct: 2990 SPSPTPGICGAGKFQCTDLTGNKVCLANTKKCDFVPDCSDGIDE 3033
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 318 SDEPGTSA---CINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACT 473
S P T+A C F C G + +P + V D DC DG+DE + P+ CT
Sbjct: 3414 SPPPTTAAPNNCNAQQFGCVTDG---KCIPLTSVCDFNVDCLDGSDERSCPSNCT 3465
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 237 KDFTCFDGTATIPFSYVNDDYCDCFDGSDE 326
+ F C IP + V D DC DGSDE
Sbjct: 3428 QQFGCVTDGKCIPLTSVCDFNVDCLDGSDE 3457
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 25.0 bits (52), Expect(2) = 2.0
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 291 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVC 425
D DC DGSDE SA +A P N ++N+G C
Sbjct: 244 DGQDDCNDGSDEKNCSA---------SANPTPTNAQGCKLNNGGC 279
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 432 CDGTDEYANPTACTNIC 482
C DE +NP C ++C
Sbjct: 311 CIDDDECSNPNRCDHVC 327
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 148 YFVPSSYLPSPMCLDPAVYL-CLKHLSIYRQKILLVLMELLQYLSATLMTTTV 303
Y+VPSS LPSP L P+ L L L ++ L LQ +TTT+
Sbjct: 493 YYVPSSLLPSPPLLRPSNLLPSLPSLRPFKLAPFSPLTTALQACYLLFLTTTL 545
>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
Length = 382
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = +3
Query: 252 FDGTATIPFSYVNDDYCDCFDGSDEPGT-------SACINGVFH-CTNAGHRPQNLPSSR 407
F T T+ F Y+N C S EP T S+ + +F C G+RP+ LP R
Sbjct: 247 FPWTVTMSFFYMNSTKPVCNTSSYEPNTMSGRGYQSSSRSFLFTLCNKNGYRPEKLPLRR 306
Query: 408 VND 416
D
Sbjct: 307 TPD 309
>SB_43319| Best HMM Match : Laminin_A (HMM E-Value=0.0086)
Length = 375
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 274 LSATLMTTTVIVSTVAMNPVHRLV*TVFSIVQMPDTGLRICRVPGLMTESVIAVMEQMNT 453
++ +T+TV ST+A+N V L V + GL+ C P + V A+ + +N
Sbjct: 203 INTNTVTSTVGESTMALNVVVNLSSRELGEVALLSKGLKFCPTPNEL--DVFALRKDIND 260
Query: 454 LILR 465
+ R
Sbjct: 261 FVRR 264
>SB_41657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 240 DFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACI 347
D C D ATIPF DD + + +PGT +
Sbjct: 187 DGWCRDQEATIPFPSYEDDILSLVETTLQPGTKLAV 222
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 27.9 bits (59), Expect = 6.7
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 243 FTCFDGTATIPFSYVNDDYCDCFDGSDEPGT--SACINGVFHCTNAGHRPQNLPSSRVND 416
F C +G IP S+ D DC D SDE S C F C N + + S D
Sbjct: 193 FKCGNGKC-IPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNG----RCISSKWRCD 247
Query: 417 GVCDCCDGTDE 449
DC D +DE
Sbjct: 248 HDNDCGDMSDE 258
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 300 CDCFDGSDEPGTSACI 347
CDC +GS +P T AC+
Sbjct: 507 CDCINGSCDPVTGACV 522
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 423 CDCCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAG 545
C CCDG +N C C++L +E R + +L AG
Sbjct: 108 CSCCDGFCGTSNGCNCPP-CQKLDQEEREMKEEEQQLPVAG 147
>SB_44609| Best HMM Match : zf-CCHC (HMM E-Value=1.6e-24)
Length = 283
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +3
Query: 357 FHCTNAGHRPQNLPSSRVND---GVCDCCDGTDEYANPTACTNICE 485
FHC GHR + P ++ GVC C T T E
Sbjct: 142 FHCRELGHRAADCPQTKKTSAGVGVCYKCRATSHITKHCKVTTTTE 187
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 431 AITDSVINPGTRQILRPVSGICTMENTVYTSRCTG 327
AITD ++ G + I R ++G+ +NTV S+ G
Sbjct: 545 AITDGLVEGGKKYINRYLTGLKNAKNTVKLSKIGG 579
>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Frame = +3
Query: 174 QSDVPRPRGVSLSKASLYLP---TKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSAC 344
QS R VSL + LP K+ T T+ F Y N+ +C F G +
Sbjct: 28 QSPKSRWVNVSLQREMAGLPGPSMKNATAKRRTS-YSFYYKNNAFCFMFFKVSGGGYQSS 86
Query: 345 INGVFH--CTNAGHRPQNLPSSRVNDGVCDCCD 437
C G+RP+ LP R D C D
Sbjct: 87 TKSFLFTLCNKNGYRPEKLPLRRAPDEYAICDD 119
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 273 PFSYVNDDYCDCFDGSDE 326
P+SY NDDY D DG DE
Sbjct: 1158 PYSYYNDDYDD--DGDDE 1173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,967
Number of Sequences: 59808
Number of extensions: 357255
Number of successful extensions: 1282
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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