Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m16
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...   139   1e-33
At2g42390.1 68415.m05246 protein kinase C substrate, heavy chain...   109   1e-24
At1g72270.1 68414.m08355 expressed protein                             32   0.26 
At2g29310.1 68415.m03560 tropinone reductase, putative / tropine...    30   1.4  
At3g10800.1 68416.m01300 bZIP transcription factor family protei...    29   2.4  
At1g77210.1 68414.m08993 sugar transporter, putative similar to ...    28   5.5  
At1g14220.1 68414.m01683 ribonuclease T2 family protein contains...    28   5.5  
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t...    27   7.3  
At2g32470.1 68415.m03967 F-box family protein-related contains T...    27   7.3  
At1g22200.1 68414.m02776 expressed protein                             27   7.3  

>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score =  139 bits (337), Expect = 1e-33
 Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
 Frame = +3

Query: 135 SYFVIFCSVIIFAQSDVPRP-RGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDCF 311
           S+ ++  S I  + S    P  G+S      Y  + +  C DG+     + +NDD+CDC 
Sbjct: 17  SFLLLLASAIRSSSSPPNDPFLGISPQDEKYYKSSSEIKCKDGSKKFTKAQLNDDFCDCS 76

Query: 312 DGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACTNICEEL 491
           DG+DEPGTSAC  G F+C NAGH P  L SSRVNDG+CDCCDG+DEY    +C N C E 
Sbjct: 77  DGTDEPGTSACPTGKFYCRNAGHSPVILFSSRVNDGICDCCDGSDEYDGHVSCQNTCWEA 136

Query: 492 GKEARAEAQRVAELHKAGSQLRIDLIEKRK 581
           GK AR   ++  E +  G  +R   IE+ K
Sbjct: 137 GKAARENLKKKIETYNQGLVIRRQEIEQAK 166


>At2g42390.1 68415.m05246 protein kinase C substrate, heavy
           chain-related similar to Protein kinase C substrate, 80
           kDa protein, heavy chain (PKCSH) (80K-H protein)
           (Swiss-Prot:P14314) [Homo sapiens]; contains 1
           transmembrane domain;
          Length = 212

 Score =  109 bits (262), Expect = 1e-24
 Identities = 44/86 (51%), Positives = 57/86 (66%)
 Frame = +3

Query: 225 YLPTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSS 404
           Y  +    C DG+ +     +ND++CDC DG+DEPGTSAC NG F+C N G  P+ + SS
Sbjct: 35  YFDSDVIKCKDGSKSFTRDRLNDNFCDCLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSS 94

Query: 405 RVNDGVCDCCDGTDEYANPTACTNIC 482
           RVND +CDCCDG+DEY +   C N C
Sbjct: 95  RVNDRICDCCDGSDEYESSIHCPNTC 120


>At1g72270.1 68414.m08355 expressed protein
          Length = 2777

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = -1

Query: 554  QLAACFMQLCYSLSFCSGFFSELFTNVSTGRRISVFICSITAITDSVINPGTRQILR--P 381
            ++A   ++ C  LS+CS FFS + T   TG   S F+  +  ITD++ +    +  +   
Sbjct: 2338 KMARHLVENCGLLSWCSSFFS-MLTTKPTGDEDSRFVVVLEVITDALASRNDTEWSQRSA 2396

Query: 380  VSGICTMENTVYT 342
            + G+  + + +YT
Sbjct: 2397 LEGLMEISSRLYT 2409


>At2g29310.1 68415.m03560 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 262

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -1

Query: 575 FFYEVYSQL--AACFMQLCYSLSFCSGFFSELFTNVSTGRRISVFICSITAITDSVINPG 402
           F Y + + L  A  F QL + L   SGF S +F + +TG  +SV   SI ++T   +N  
Sbjct: 111 FSYHISTNLEPAFHFSQLSHLLLKASGFGSIVFMSSATG-VVSVQCGSIYSLTKGALNQL 169

Query: 401 TRQI 390
           TR +
Sbjct: 170 TRNL 173


>At3g10800.1 68416.m01300 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; contains similarity to TGACG-sequence specific
           DNA-binding protein TGA-1B (HSBF) GB:P14233 [Nicotiana
           tabacum]
          Length = 675

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 369 NAGHRPQNLPSSRVNDGVCDCCDGTDEYANP 461
           N+G    N+ SSR++ G  D C G D  A+P
Sbjct: 386 NSGISEGNIHSSRISHGERDSCGGVDYNAHP 416


>At1g77210.1 68414.m08993 sugar transporter, putative similar to
           monosaccharide transporter PaMst-1 [Picea abies]
           GI:2258137, sugar carrier protein GI:169735 from
           [Ricinus communis], glucose transporter [Saccharum
           hybrid cultivar H65-7052] GI:347855; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 504

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 557 SQLAACFMQLCYSLSFCSGFFSELFTNVSTGRRISVFICSITAITDSVINPGTRQILRPV 378
           +Q+   F    Y     S F +   T +  GRR S+ + S++     VIN   + IL  +
Sbjct: 82  NQILTLFTSSLYFAGLISTFGASYVTRIY-GRRGSILVGSVSFFLGGVINAAAKNILMLI 140

Query: 377 SG 372
            G
Sbjct: 141 LG 142


>At1g14220.1 68414.m01683 ribonuclease T2 family protein contains
           similarity to S-like ribonuclease PD1 GI:9957752 from
           [Prunus dulcis]; contains ribonuclease T2 family
           histidine protein motif
          Length = 228

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 231 PTKDFTCFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQN 392
           P +DF  F      P +Y +     C+  S +P     I+G++   N G  P N
Sbjct: 24  PQEDFDFFYFVLQWPGAYCDTSRACCYPTSGKPAADFGIHGLWPNYNGGSWPSN 77


>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
           GB:AAC39463 from [Zea mays], PF00076 RNA recognition
           motif (2 copies)
          Length = 615

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 139 IS*YFVPSSYLPSPMCLDPAVYLCLKHL-SIYRQKILLVLME 261
           +S + +    +  P C DP   L +K++ + Y QK+LL +++
Sbjct: 388 LSQFLISEETMEDPSCRDPRTTLMIKNIPNKYSQKLLLDMLD 429


>At2g32470.1 68415.m03967 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           similar to F-box protein Fbx8 (GI:6164735) [Homo
           sapiens]
          Length = 288

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 485 FTNVSTGRRISVFICSITAITDSVINPGTRQILRPVSGICTMENTVY 345
           F N      ++ F+C     + +V NP TRQI++ +  + T EN ++
Sbjct: 6   FVNYIRSPPVNGFVCCTRGSSIAVCNPTTRQIVK-LPDVVTNENYMH 51


>At1g22200.1 68414.m02776 expressed protein
          Length = 386

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 411 NDGVCDCCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKRK*E 587
           N+  C  C G +  A+  AC N CEE+ +  R +   +++        R   ++K K E
Sbjct: 142 NETYCGSCFGAE--ASDDACCNSCEEVREAYRKKGWALSDPESIDQCKREGFVQKVKDE 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,715
Number of Sequences: 28952
Number of extensions: 236069
Number of successful extensions: 655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)