Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m14
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                93   1e-19
SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   2e-15
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   2e-15
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)              72   3e-13
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 69   3e-12
SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)              29   2.1  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    29   2.8  
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)             28   4.8  
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         28   4.8  
SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)            27   8.5  

>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 53/113 (46%), Positives = 69/113 (61%), Gaps = 2/113 (1%)
 Frame = +1

Query: 112 LNDGNSIPALGLGTFLGFDEKGQKEVKPGDSEKPVKWALEAGYRLIDTAALYLNEDQIGA 291
           +NDG  IP LGLG           ++    S++ V WALE+GYRLIDTA+ Y NE  +G 
Sbjct: 70  MNDGRKIPLLGLGAH---------DIH---SKQAVLWALESGYRLIDTASRYHNEQSVGE 117

Query: 292 AVRASGIPREDIFIVTKLPMDNQ--RDVVKQLEKSLARLNMSYVDLYLIHNPV 444
           AVR S IPR +I++VTK+       ++ +    KSL RL + YVDLYLIH PV
Sbjct: 118 AVRCSNIPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFPV 170


>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 15/156 (9%)
 Frame = +1

Query: 106 ISLNDGNSIPALGLGTFLGFDEKGQKEVKPGDSEKPVKWALEAGYRLIDTAALYLNEDQI 285
           + LN+G  +P LGLGT+         + KPG  E  VK+A++ GYR ID A  Y NE ++
Sbjct: 4   VKLNNGLEMPVLGLGTW---------KSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKEV 54

Query: 286 GAAVR---ASGIPREDIFIVTKL--PMDNQRDVVKQLEKSLARLNMSYVDLYLIHNPVAF 450
           G A+R    S + R+D+FI +KL     N +DV      SL  L + Y+DLYLIH P++F
Sbjct: 55  GDALRELLGSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPLSF 114

Query: 451 NPGFKGF------DIV----DYLDTWKGMEEAKNLG 528
             G + F      +++    D  DTWK ME+  + G
Sbjct: 115 RDGDEFFPKDEQGNVLYAYHDPCDTWKAMEKLVDEG 150



 Score = 31.1 bits (67), Expect = 0.69
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 485 TWTPGKAWRKLKI*ALAKSIGISNFNTTQID 577
           TW   KA  KL    L K+IG+SNFN+ Q+D
Sbjct: 139 TW---KAMEKLVDEGLVKAIGLSNFNSKQVD 166


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 35/76 (46%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
 Frame = +1

Query: 220 WALEAGYRLIDTAALYLNEDQIGAAVRASGIPREDIFIVTKL--PMDNQRDVVKQLEKSL 393
           +AL+ GYR++DTA +Y NE ++G+AVR SG+ REDI++ TKL    +   + +K  ++S+
Sbjct: 52  FALKNGYRMLDTADIYQNEKEVGSAVRKSGLKREDIYVTTKLKPSEEGHSNALKYAKESI 111

Query: 394 ARLNMSYVDLYLIHNP 441
            +L++ YVDL+LIH P
Sbjct: 112 KKLDIGYVDLFLIHTP 127


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
 Frame = +1

Query: 94  KASKISLNDGNSIPALGLGTFLGFDEKGQKEVKPGDSEKPVKWALEAGYRLIDTAALY-L 270
           + + + L  G ++P +G GT       G+      D+   VK ALE GYRLIDTA  Y L
Sbjct: 325 RPADVLLASGYTMPVMGFGTAT----LGE------DTLSVVKTALETGYRLIDTAQGYPL 374

Query: 271 NEDQIGAAVRASGIPREDIFIVTKLPMD--NQRDVVKQLEKSLARLNMSYVDLYLIHNPV 444
           +E Q+  A+  SGIPR+DIFI+TKL          +K +E SL  L+  Y+DL+LIH+  
Sbjct: 375 SEPQVAKAIADSGIPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIHSKT 434

Query: 445 AFN---PGFKGFDIVDYLDTWKGMEEAKNLG 528
             +      +G     + ++WK MEE    G
Sbjct: 435 CDDFLLTCAEGEPRGTWKESWKAMEELHRQG 465


>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
          Length = 93

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
 Frame = +1

Query: 109 SLNDGNSIPALGLGTFLGFDEKGQKEVKPGDSEKPVKWALEAGYRLIDTAALYLNEDQIG 288
           +L+DG  IP  GLG +   DEK  K+         V WALE GYR+IDTAA Y NE ++G
Sbjct: 2   TLSDGYKIPRFGLGLY-DLDEKHTKQA--------VLWALENGYRMIDTAASYNNEKRVG 52

Query: 289 AAVRASGIPREDIFIVTKLPMDNQ--RDVVKQLEKSLARL 402
            A+R S +PR ++++VTK+   +      +K  ++SL+ L
Sbjct: 53  EALRESAVPRSEVYLVTKVYHTDHGYEKTMKAYDRSLSAL 92


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
 Frame = +1

Query: 214 VKWALEAGYRLIDTAALYLNEDQIGAA---VRASG-IPREDIFIVTKLPMDNQR--DVVK 375
           V+ A+E GYR ID A +Y NE +IG A   V   G + RE++F+ +KL  D+    DV+ 
Sbjct: 71  VRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKLWCDSHHPDDVLP 130

Query: 376 QLEKSLARLNMSYVDLYLIHNPVAFNPGFK 465
             + +L  L + Y+DLYLIH PVAF  G +
Sbjct: 131 ACQATLKNLQLDYLDLYLIHIPVAFKKGVR 160



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 214 VKWALEAGYRLIDTAALYLNEDQIGAAVRASG-IPRED 324
           V+ A E GYRLID A ++ NE +  + V   G + RE+
Sbjct: 18  VRLAAELGYRLIDCAEIHGNEGEALSGVLTKGKVKREE 55


>SB_40904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 530 GPRFLASSMPFQVSK*STMSKPLNPGLKATGLCIKYRST*LMFNLAKDFSN 378
           GP+++   + + +S  S + KP+  G+ A  L    R + L F+   DF N
Sbjct: 104 GPKWMKKHLTYHISHGSDLPKPVQDGVFAKALDYWARVSGLSFSRTMDFQN 154


>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
          Length = 678

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 222 GFRSRI*INRYGRIVFK*RSDRSGRPRLWHSERGHLHRD*ATNGQSE 362
           G R R+     G   +  R  RS R R W  ERG+  RD    G S+
Sbjct: 193 GIRIRVRKKERGGKEYDTRDKRSHRGRKWRDERGNTSRDQRDEGLSD 239


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +1

Query: 238 YRLIDTAALYLNEDQIGAAVRASGIPREDIFIVTKLPMDNQRDVVKQLEKSLARLNMSYV 417
           Y L DT   YLN           G+ RE   ++  +P+DN+ D  +   K    L   Y 
Sbjct: 51  YDLPDTLQEYLNAVHARLDGAEEGV-RECDSVLELIPLDNKGDEERLARKIKEALGDEYE 109

Query: 418 DLYLIHNPV 444
           D   +HN V
Sbjct: 110 DPISLHNQV 118


>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
          Length = 195

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 334 VTKLPMDNQRDVVKQL--EKSLARLNMSYVDLYLIH 435
           ++K+  +N  ++   L  EKSL RL +  +DLYL+H
Sbjct: 31  LSKVRPENASEMKMMLSCEKSLERLGIDRIDLYLLH 66


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 176 PFSSNPRKVPRPKAGIELPSFSEIFEALPPP 84
           P +S+ R++P P+     P   EI   +PPP
Sbjct: 788 PKTSDKREIPTPEMARSFPHLREIAAHIPPP 818


>SB_3196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 501 FPGVQVIYNVETFESRIKSNWIVY 430
           FP  Q IY+V +F+ R +SN+ +Y
Sbjct: 41  FPATQGIYDVLSFQERDESNYKIY 64


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 157  LGFDEKGQKEVKPGDSEKPVK 219
            L +DEK +KEVKP D +K +K
Sbjct: 2363 LSYDEKIKKEVKPLDVQKIIK 2383


>SB_3640| Best HMM Match : Thioredoxin (HMM E-Value=4.3e-33)
          Length = 386

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 215 TGFSESPGLTSFCPFSSNPRKVPRPKAGIELPSFSEIFEALPPPVVASDR*TIKVVITNT 36
           TG S +    SF  F+S+P++ PRP      P   + +  +P  V      T K  +   
Sbjct: 159 TGLSPNGTRPSFYLFTSSPKEPPRP------PPPEQEWSEIPSEVYHLSDTTFKSFVKKK 212

Query: 35  MHLIVQGY 12
            H++V  Y
Sbjct: 213 KHVLVMFY 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,025
Number of Sequences: 59808
Number of extensions: 377833
Number of successful extensions: 841
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)