Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m13
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   6.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.1  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   8.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 93  YLEITADSIFNFVICAFNC 149
           YLEI    I+N   C  NC
Sbjct: 783 YLEIKCKRIYNEKQCCKNC 801


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +3

Query: 282 RTQMRVRNLNRYLRPMRCSRILTKGEFMIKVVNKH*RKGVVVVVDFLHQWISLTCSLEVD 461
           R + R ++LN     +R S      + + K+      K     +DFL+  +S   +L+VD
Sbjct: 104 RERQRTQSLNEAFASLRKSIPTMPSDKLSKIQTL---KLAARYIDFLYHVLSNENALDVD 160

Query: 462 LV 467
           L+
Sbjct: 161 LI 162


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 158 LGIIKMVKETTYYDILGVKPN 220
           L ++  V  T YYD   + PN
Sbjct: 217 LTVLPNVNSTVYYDPRALSPN 237


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 28  LTCSKVSSCLSFHAKY 75
           L  S +SSCLSF +++
Sbjct: 121 LRASLISSCLSFFSQW 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,148
Number of Sequences: 336
Number of extensions: 2475
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)