Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m13
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.76 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.1  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 1   DS*LNRDLCLTCSKVSSCLSFHAKY 75
           D+  N D CLT  K S C+  + K+
Sbjct: 103 DNAKNEDKCLTAQKFSRCVIDYVKF 127


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 194 NMWSP*PFLLCLSMFTIKCTNHK 126
           ++W P P+ L   +  I   NHK
Sbjct: 70  SLWQPDPYFLNAKVSEIAALNHK 92


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 318 LRPMRCSRILTKGEFMIKVVNK 383
           L  +R   +L KG F I+++NK
Sbjct: 468 LTALRKRDVLKKGNFTIEILNK 489


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 332 VLSNPDKRRIYD 367
           V  NPD +R+YD
Sbjct: 23  VAGNPDAKRLYD 34


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 332 VLSNPDKRRIYD 367
           V  NPD +R+YD
Sbjct: 23  VAGNPDAKRLYD 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,102
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)