Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m12
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 209 2e-55
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 119 4e-28
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 116 2e-27
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 116 2e-27
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 113 2e-26
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 111 1e-25
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 92 5e-20
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 29 0.53
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 6.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 8.6
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 209 bits (511), Expect = 2e-55
Identities = 96/167 (57%), Positives = 125/167 (74%)
Frame = +3
Query: 105 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 284
GFDR IT+FSPEGRLYQVEYA KA N G+TSV + G + A V +Q+KVPD+L+D +V
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 285 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 464
H+F +T IGCVMTG IAD+R+QV RAR EAA ++YK G +P +L +R+A+I+QV TQ
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 465 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVD 605
A MRPLG +M L+A DDE GP ++K DP+G+Y YKA +AG K +
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTE 172
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 119 bits (286), Expect = 4e-28
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 1/168 (0%)
Frame = +3
Query: 99 SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PV 275
S +D TIFSPEGRLYQVEYAL+AIN G+ ++ + D V+AA++KV +LL+
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 276 SVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQV 455
S L+ + D + C + G+ AD+ + AR + + E+P L RR+ D+ Q
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 456 YTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKT 599
YTQ +RP G S + +D G +++++PSG Y S++A + G +
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNS 168
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 116 bits (280), Expect = 2e-27
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Frame = +3
Query: 120 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFAL 299
+T FSP G+L Q+EYAL A+N G+TSV ++ TD V+A ++K L S+ + A+
Sbjct: 9 LTTFSPNGKLVQIEYALNAVN-AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67
Query: 300 TDRIGCVMTGMIADSRSQVQRARYEAANWQYK--YGSEIPVHILCRRIADISQVYTQNAE 473
T IG V +GM D R V ++R + A YK Y P IL + IA + Q TQ+
Sbjct: 68 TPDIGMVYSGMGPDFRVLVDKSR-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGG 126
Query: 474 MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 590
+RP G S+ L+A DE GP +Y+ DPSG Y ++KA A G
Sbjct: 127 VRPFGVSL-LVAGMDEKGPSLYQVDPSGTYFAWKATAIG 164
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 116 bits (280), Expect = 2e-27
Identities = 63/166 (37%), Positives = 99/166 (59%), Gaps = 3/166 (1%)
Frame = +3
Query: 102 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRK-VPDRLLDPVS 278
+G+DR +++FSP+GRL QVEY +A+ +G T++ALRG + V+ +RK VP L VS
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRG-TTAIALRGNECIVIGVERKNVPK--LQNVS 58
Query: 279 VTHLFALTDRIGCV-MTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQV 455
A+ D C+ G+ AD+R + +AR EA N + + + L R +A + Q
Sbjct: 59 NFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQK 118
Query: 456 YTQNAEMRPLGCSMMLIAYD-DEAGPCVYKTDPSGYYCSYKAVAAG 590
YTQ+ +RP G S ++ +D + P VY+T+P+G Y ++KA A G
Sbjct: 119 YTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIG 164
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 113 bits (272), Expect = 2e-26
Identities = 58/162 (35%), Positives = 90/162 (55%)
Frame = +3
Query: 105 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 284
G+D + FSP+GRL+Q EYA KA+ T + ++ D ++A ++ V +LL P
Sbjct: 7 GYDLGL-FFSPDGRLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLKPRVNN 64
Query: 285 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 464
+ ++ IG TG I D + V+RAR EA +W+ YGS IP ++ R+ + Q++T
Sbjct: 65 RIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTC 124
Query: 465 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 590
+ +RP G + YD E GP +Y +P+G Y Y AAG
Sbjct: 125 YSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAG 165
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 111 bits (266), Expect = 1e-25
Identities = 58/168 (34%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Frame = +3
Query: 108 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 287
+DR + FSPEGRL+QVEYA++AI G T++ ++ DA V+ ++++ L++ SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKDAVVLGVEKRLTSPLMESHSVEK 66
Query: 288 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 467
LF + IGC ++G+ AD+R+ ++ AR + N ++ Y + + I D++ + +
Sbjct: 67 LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEG 126
Query: 468 AE------MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGA 593
+ RP G + +LIA DE GP +Y ++PSG Y Y+A A G+
Sbjct: 127 EDGEERIMSRPFGVA-LLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGS 173
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 92.3 bits (219), Expect = 5e-20
Identities = 55/164 (33%), Positives = 86/164 (52%)
Frame = +3
Query: 108 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 287
+D T +SP+GRL+QVEYAL+AI QG T + T A +VA +R + L
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEE--LSSYQ-KK 62
Query: 288 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 467
L + D IG + G+ D+R + EA + + + IPV L ++A+ +Q+ TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 468 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKT 599
RP G ++I Y DE+GP + + PSG Y + G+++
Sbjct: 123 YGRRPYGVGFLVIGY-DESGPHLLEFQPSGLVLEYLGTSMGSRS 165
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 29.1 bits (62), Expect = 0.53
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +3
Query: 327 GMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLI 506
GM +R+ Q +E +W Y + V LCR + ++ N + + LI
Sbjct: 606 GMCPYTRAVSQHVEWENDSWMYVLNVSLQVAKLCRHVGNVFMELNTNKLANAINYLISLI 665
Query: 507 AY 512
Y
Sbjct: 666 LY 667
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 381 WQPRSELVVLETGYQQSSR 325
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 8.6
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 276 SVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADIS-Q 452
++ +L+ +I CV AD Q QR + + + G P HI I + S +
Sbjct: 509 NLLNLYPDLQKIPCVFAATKADLDRQQQRYPVQPDEFTKQLGLPSPTHISTAAIWNTSKE 568
Query: 453 VYTQNAEMRPLGCSMMLIAYDDEAGPCVYK 542
+ Q AE S ++ ++++ Y+
Sbjct: 569 FFIQLAESAQYPASSIIRIPEEDSNKTNYQ 598
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,443
Number of Sequences: 5004
Number of extensions: 44186
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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