Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m12
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)           202   2e-52
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 127   8e-30
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   7e-23
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)           100   2e-21
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   2.2  
SB_46284| Best HMM Match : RVT_1 (HMM E-Value=0.48)                    29   3.0  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   3.9  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score =  202 bits (492), Expect = 2e-52
 Identities = 103/176 (58%), Positives = 121/176 (68%)
 Frame = +3

Query: 84  MARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRL 263
           M+R +SAGFDRHITIFSPEGRLY           GGLTSV +RG D+AVV  Q+KVP   
Sbjct: 1   MSRGTSAGFDRHITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQKKVPL-- 58

Query: 264 LDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIAD 443
             P+                    ADSRSQVQRARYEAANW+YK+G EIPV +LC+RIAD
Sbjct: 59  --PIPQ------------------ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIAD 98

Query: 444 ISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGN 611
           ISQVYTQNAEMRPLGC M+LI  D+E GP +YKTDP+GY+C +KA + G K  + N
Sbjct: 99  ISQVYTQNAEMRPLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEAN 154


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  127 bits (306), Expect = 8e-30
 Identities = 61/169 (36%), Positives = 100/169 (59%)
 Frame = +3

Query: 99  SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVS 278
           S  +DR IT+FSP+G L+QVEYA +A+ +G  T+V +RG +  V+  +RK   +L +P +
Sbjct: 2   SGSYDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGNNIVVLGVERKAVAKLQEPRT 60

Query: 279 VTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVY 458
           V  +  L D +     G+ AD+R  V +AR E  + +      + +  + R IA + Q Y
Sbjct: 61  VRKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRY 120

Query: 459 TQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVD 605
           TQ+   RP G S +++ +D +  P +Y+TDPSG Y ++K V +G K ++
Sbjct: 121 TQSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSGGKNIE 169


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score =  104 bits (249), Expect = 7e-23
 Identities = 45/53 (84%), Positives = 51/53 (96%)
 Frame = +3

Query: 333 IADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGC 491
           +ADSRSQVQRARYEAANW+YK+G EIPV +LC+R+ADISQVYTQNAEMRPLGC
Sbjct: 25  VADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLGC 77



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +3

Query: 84  MARESSAGFDRHITIFSPEGRLYQV 158
           M+R +SAGFDRHITIFSPEGRLYQV
Sbjct: 1   MSRGTSAGFDRHITIFSPEGRLYQV 25


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 50/133 (37%), Positives = 78/133 (58%)
 Frame = +3

Query: 108 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 287
           +D   + FSP+GR++QVEYA KA+   G T++A+R  D  V   ++ V  +L +  +   
Sbjct: 137 YDLSASQFSPDGRVFQVEYANKAVENSG-TAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195

Query: 288 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 467
           +F +   IG  + G+IADSR  V  AR EAAN++  YGS IP+  L  R++     +T  
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255

Query: 468 AEMRPLGCSMMLI 506
           + MRP GC + ++
Sbjct: 256 SAMRPFGCRIYVV 268


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 396  YGSEIPVHILCRRIADISQV--YTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYC 566
            YG+   ++ +   I D+     Y      RPLGC     +Y D  G    K  PSGY+C
Sbjct: 1948 YGNCSALYDIHTGIGDVCPTGHYCPIGSARPLGCPAG--SYQDNKGMSHCKDCPSGYFC 2004


>SB_46284| Best HMM Match : RVT_1 (HMM E-Value=0.48)
          Length = 549

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = -3

Query: 422 DMHRYLRPILVLPVGSLVASSLYLRPAI 339
           D++++LRPI ++P+ S VA   Y++PA+
Sbjct: 295 DVNKHLRPISLIPILSKVAEK-YVKPAV 321


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 114 RHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLF 293
           RHI  F   G L  ++  L+ IN          G  +AVV+A RK+P++  D    + LF
Sbjct: 440 RHIWAFGNLGHLSGLDVILRHINHDS------SGIRSAVVSAMRKLPEKHTDEHLFSTLF 493

Query: 294 A 296
           +
Sbjct: 494 S 494


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 501 ASYCNPEVSSLHFGCKLERYQLCVCIRYAQVSQ-THTCTASWQPRSELVVL 352
           A  C P+  ++   CKL+  Q CV   +++ S  +H C    + RS  V++
Sbjct: 491 AGDCCPDFKAVKEECKLQGVQDCVVSTWSRWSPCSHRCGVGMRKRSRRVIV 541


>SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 522 LHRRTLSASYCNPEVSSLHFGCKLERYQLCVCIRYAQVSQTHTCTASWQPRSELVVLETG 343
           ++ +TL  S    E+    F    +R++L  C  Y     TH CT +W P S L   E G
Sbjct: 412 IYWKTLGESVKYVEMKIKSFPTATKRWELTFCPFYR--IWTH-CTVTWSPVSGLKYYENG 468

Query: 342 YQQSS 328
              +S
Sbjct: 469 VLTAS 473


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 519 EAGPCVYKTDPSGYYCSYKAVAAGAKT 599
           + GP +++T PS  Y   KA+A GA++
Sbjct: 1   DMGPHIFQTCPSANYFDCKAMAIGARS 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,235,724
Number of Sequences: 59808
Number of extensions: 364787
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)