Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m12
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 516 RRTLSASYCNPEV---SSLHFGCKLERYQLCVCIRYAQVSQTHTCTASWQPRSELVVLET 346
           ++ LSA+Y N E+   S       LER  L       Q S THT   +W+ +  + +L +
Sbjct: 459 KQILSAAY-NVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 517


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 516 RRTLSASYCNPEV---SSLHFGCKLERYQLCVCIRYAQVSQTHTCTASWQPRSELVVLET 346
           ++ LSA+Y N E+   S       LER  L       Q S THT   +W+ +  + +L +
Sbjct: 497 KQILSAAY-NVELHNSSPFSIYSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 555


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 448 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 299
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTV 263


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 448 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 299
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTV 263


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 448 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 299
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTV 259


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 381 NWQYKYGSEIPVHIL 425
           NW Y++   IP HI+
Sbjct: 628 NWVYEWKELIPSHIM 642


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -3

Query: 236 CHYSCICTA*CHRC 195
           C Y   C A CH C
Sbjct: 737 CRYEAHCFALCHCC 750


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 365  SSLYLRPAISNHPGHD 318
            SSL+ RP+  N+P  D
Sbjct: 1903 SSLWSRPSTQNNPSSD 1918


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 365  SSLYLRPAISNHPGHD 318
            SSL+ RP+  N+P  D
Sbjct: 1899 SSLWSRPSTQNNPSSD 1914


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,920
Number of Sequences: 438
Number of extensions: 3022
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)