Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m12
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 210 4e-55
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 210 4e-55
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 133 8e-32
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 133 8e-32
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 124 6e-29
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 124 6e-29
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 123 8e-29
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 123 8e-29
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 122 1e-28
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 107 4e-24
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 101 4e-22
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 101 4e-22
At2g26510.1 68415.m03181 xanthine/uracil permease family protein... 29 1.8
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila... 29 2.4
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05... 28 5.6
At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to G... 27 7.4
At1g43777.1 68414.m05042 hypothetical protein 27 9.8
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 210 bits (514), Expect = 4e-55
Identities = 99/171 (57%), Positives = 129/171 (75%)
Frame = +3
Query: 84 MARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRL 263
M+R S AG+DRHITIFSPEGRL+QVEYA KA+ G+TS+ +RG D+ V Q+KVPD+L
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 264 LDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIAD 443
LD SVTHLF +T IG V TG+ AD+RS VQ+AR +AA +++ YG E+PV IL + IAD
Sbjct: 61 LDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIAD 120
Query: 444 ISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAK 596
SQVYTQ+A MRPLG M++ D+E GP +YK DP+G++ +KA +AG K
Sbjct: 121 KSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMK 171
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 210 bits (514), Expect = 4e-55
Identities = 98/171 (57%), Positives = 129/171 (75%)
Frame = +3
Query: 84 MARESSAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRL 263
M+R S AG+DRHITIFSPEGRL+QVEYA KA+ G+TS+ +RG D+ V Q+KVPD+L
Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKL 60
Query: 264 LDPVSVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIAD 443
LD SV+HLF +T +G + TGM ADSRS VQ+AR EAA ++++YG E+P IL + IAD
Sbjct: 61 LDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIAD 120
Query: 444 ISQVYTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAK 596
SQVYTQ+A MRPLG M++ D+E GP +YK DP+G++ +KA +AG K
Sbjct: 121 KSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMK 171
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 133 bits (322), Expect = 8e-32
Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 5/173 (2%)
Frame = +3
Query: 108 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 287
+DR + FSPEGRL+QVEYA++AI G T++ ++ + V+A ++++ LL+P SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKEGVVLAVEKRITSPLLEPSSVEK 66
Query: 288 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 467
+ + D IGC M+G+IAD+R+ V+ AR E N ++ YG + V + + D++ + +
Sbjct: 67 IMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
Query: 468 AE---MRPLGCSMMLIAYDDEAGPCVYKTDPSG--YYCSYKAVAAGAKTVDGN 611
E RP G S +LIA DE GP +Y TDPSG + C+ KA+ +G++ D +
Sbjct: 127 EEESMSRPFGVS-LLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS 178
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 133 bits (322), Expect = 8e-32
Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 5/173 (2%)
Frame = +3
Query: 108 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 287
+DR + FSPEGRL+QVEYA++AI G T++ ++ + V+A ++++ LL+P SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKEGVVLAVEKRITSPLLEPSSVEK 66
Query: 288 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 467
+ + D IGC M+G+IAD+R+ V+ AR E N ++ YG + V + + D++ + +
Sbjct: 67 IMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEG 126
Query: 468 AE---MRPLGCSMMLIAYDDEAGPCVYKTDPSG--YYCSYKAVAAGAKTVDGN 611
E RP G S +LIA DE GP +Y TDPSG + C+ KA+ +G++ D +
Sbjct: 127 EEESMSRPFGVS-LLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS 178
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 124 bits (298), Expect = 6e-29
Identities = 62/164 (37%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Frame = +3
Query: 102 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSV 281
A +DR IT+FSP+G L+QVEYAL+A+ +G +V +RGTD V+A ++K +L D S
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTVVLAVEKKSTPKLQDSRSA 60
Query: 282 THLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYT 461
+ +L + I G+ AD+R + +AR E + + + V + R IA + Q YT
Sbjct: 61 RKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYT 120
Query: 462 QNAEMRPLGCSMMLIAYDDEAG-PCVYKTDPSGYYCSYKAVAAG 590
Q+ +RP G S +++ +D + P +Y+TDPSG + ++KA A G
Sbjct: 121 QSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATG 164
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 124 bits (298), Expect = 6e-29
Identities = 62/164 (37%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Frame = +3
Query: 102 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSV 281
A +DR IT+FSP+G L+QVEYAL+A+ +G +V +RGTD V+A ++K +L D S
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTVVLAVEKKSTPKLQDSRSA 60
Query: 282 THLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYT 461
+ +L + I G+ AD+R + +AR E + + + V + R IA + Q YT
Sbjct: 61 RKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYT 120
Query: 462 QNAEMRPLGCSMMLIAYDDEAG-PCVYKTDPSGYYCSYKAVAAG 590
Q+ +RP G S +++ +D P +Y+TDPSG + ++KA A G
Sbjct: 121 QSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATG 164
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 123 bits (297), Expect = 8e-29
Identities = 64/157 (40%), Positives = 97/157 (61%)
Frame = +3
Query: 120 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFAL 299
+T FSP G+L Q+E+AL A+ G TS+ ++ ++ V+A ++K+P L+D SV + L
Sbjct: 10 LTTFSPSGKLVQIEHALTAVGSGQ-TSLGIKASNGVVIATEKKLPSILVDEASVQKIQHL 68
Query: 300 TDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMR 479
T IG V +GM D R V+++R +A + Y IPV L R A + Q +TQ+ +R
Sbjct: 69 TPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVR 128
Query: 480 PLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 590
P G S+++ YDD+ GP +Y+ DPSG Y S+KA A G
Sbjct: 129 PFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMG 164
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 123 bits (297), Expect = 8e-29
Identities = 64/157 (40%), Positives = 97/157 (61%)
Frame = +3
Query: 120 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTHLFAL 299
+T FSP G+L Q+E+AL A+ G TS+ ++ ++ V+A ++K+P L+D SV + L
Sbjct: 10 LTTFSPSGKLVQIEHALTAVGSGQ-TSLGIKASNGVVIATEKKLPSILVDEASVQKIQHL 68
Query: 300 TDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMR 479
T IG V +GM D R V+++R +A + Y IPV L R A + Q +TQ+ +R
Sbjct: 69 TPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVR 128
Query: 480 PLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 590
P G S+++ YDD+ GP +Y+ DPSG Y S+KA A G
Sbjct: 129 PFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMG 164
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 122 bits (295), Expect = 1e-28
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 1/166 (0%)
Frame = +3
Query: 99 SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PV 275
S +D TIFSPEGRLYQVEYA++AI G +++ + D V+ ++KV +LL
Sbjct: 2 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLIGEKKVTSKLLQTST 60
Query: 276 SVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQV 455
S ++ + D + C + G+++D+ + AR +A + + Y +PV L + + D Q
Sbjct: 61 SAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQG 120
Query: 456 YTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGA 593
YTQ +RP G S + +D G +Y +DPSG Y +KA A GA
Sbjct: 121 YTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGA 166
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 107 bits (258), Expect = 4e-24
Identities = 55/162 (33%), Positives = 90/162 (55%)
Frame = +3
Query: 105 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVT 284
G+D +T FSP+GR++Q+EYA KA++ G T V ++ D V+ ++ + +++ P S
Sbjct: 7 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG-TVVGIKCKDGIVMGVEKLIASKMMLPGSNR 65
Query: 285 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 464
+ ++ G + G+ AD R V RA+ EA +++ YG +PV L R+A + T
Sbjct: 66 RIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTL 125
Query: 465 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAG 590
+RP GC ++L YD + GP +Y +PSG Y A G
Sbjct: 126 YWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIG 166
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 101 bits (242), Expect = 4e-22
Identities = 59/164 (35%), Positives = 88/164 (53%)
Frame = +3
Query: 108 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 287
+D +T +SP GRL+QVEYA++A+ QG ++ LR V+A K L
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGS-AAIGLRSRSHVVLACVNKAQSELSS--HQRK 62
Query: 288 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 467
+F + D IG + G+ AD R + R E+ N + Y S +PV L +AD +QV TQ
Sbjct: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQR 122
Query: 468 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKT 599
+ RP G +L+ DE+G +Y PSG Y Y+A A G+++
Sbjct: 123 SWKRPYGVG-LLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRS 165
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 101 bits (242), Expect = 4e-22
Identities = 59/164 (35%), Positives = 88/164 (53%)
Frame = +3
Query: 108 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPVSVTH 287
+D +T +SP GRL+QVEYA++A+ QG ++ LR V+A K L
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGS-AAIGLRSRSHVVLACVNKAQSELSS--HQRK 62
Query: 288 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 467
+F + D IG + G+ AD R + R E+ N + Y S +PV L +AD +QV TQ
Sbjct: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQR 122
Query: 468 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKT 599
+ RP G +L+ DE+G +Y PSG Y Y+A A G+++
Sbjct: 123 SWKRPYGVG-LLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRS 165
>At2g26510.1 68415.m03181 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 551
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = -3
Query: 509 RYQHHTATQRSHLCILGVNLRDISYASA*-DMHRYLRPILVLPVGSLVASSLYLR--PAI 339
R++H T + L I I Y A ++ R PI+V+PV S+V+ L+LR P +
Sbjct: 147 RFRHTMRTVQGSLIISSFVNIIIGYGQAWGNLIRIFSPIIVVPVVSVVSLGLFLRGFPLL 206
Query: 338 SN 333
+N
Sbjct: 207 AN 208
>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990], from Calliphora vicina [SP|P08793];
contains Pfam profile PF02738 Aldehyde oxidase and
xanthine dehydrogenase, molybdopterin binding domain
Length = 1364
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 489 CSMMLIAYDDEAGPCV--YKTDPSGYYCSYKAVAA 587
C++M+ +YD E+ CV Y +YC + AV A
Sbjct: 51 CTVMVSSYDRESKTCVPSYTVHTGNFYCRHYAVNA 85
>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05794:
T-complex protein 11
Length = 1097
Score = 27.9 bits (59), Expect = 5.6
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = -1
Query: 550 GSVLYTQGPASSSYAISIILQPRGLISAFWV*T*EISAMRLHKICTGISDPYLYCQLAAS 371
G ++ T G ++SSYA+ ++ R ++ + EIS RL + + P L S
Sbjct: 746 GEIVPTDGHSNSSYAVLMVKGLRFVLQQIQILKKEISKSRLKLLEPLLKGPAGLEYLKKS 805
Query: 370 *RAR-CT*DRLSAIIPVMTHPILSVR 296
+R + D+ S+ +P+ +LSVR
Sbjct: 806 FSSRHGSPDQASSSLPLTKRWLLSVR 831
>At1g71692.1 68414.m08279 MADS-box protein (AGL12) identical to
GB:AAC49085 GI:862650 from (Arabidopsis thaliana) (Plant
Cell 7 (8), 1259-1269 (1995))
Length = 211
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +3
Query: 81 RMARESSAGFDRHI--TIFSPEGRLYQVEYALKAINQGGLTSVAL-----RGTDAAVVAA 239
+ A+E S D I IFSP+G+L+ E A K +G + RG+ +A A
Sbjct: 30 KKAKELSVLCDAEIGVVIFSPQGKLF--ELATKGTMEGMIDKYMKCTGGGRGSSSATFTA 87
Query: 240 QRKVPDRLLDP 272
Q ++ LDP
Sbjct: 88 QEQLQPPNLDP 98
>At1g43777.1 68414.m05042 hypothetical protein
Length = 241
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 349 LKYNELATRLPTGST----SMGLRYLCISYADA*LISLKFTPKMQR 474
L+ + TRLP G + LRY C++ D L+ + PK+ +
Sbjct: 45 LREFKFVTRLPCGKVVTDREIRLRYACLALVDGFLLPTSYYPKIAK 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,712
Number of Sequences: 28952
Number of extensions: 234909
Number of successful extensions: 572
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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