Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m11
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    93   3e-20
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    46   7e-06
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             30   0.26 
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    28   1.4  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    28   1.4  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   2.4  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   2.4  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    27   3.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   3.2  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   4.3  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   4.3  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   4.3  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   4.3  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   5.6  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   7.5  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    25   9.9  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   9.9  

>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 3/173 (1%)
 Frame = +3

Query: 135 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQ-EENAKIENSEDETELDIAIIRQVEYYF 311
           + +V   +E+ +V+   K T  +E   ET  + E++ K + S DE E    +++QVE+YF
Sbjct: 20  SSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSFDEAE----VLKQVEFYF 75

Query: 312 GDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSED 491
            D NL  DKFL    + +DGWVP++T+  F R+ +  +  + I NAL KS   LLEV E 
Sbjct: 76  SDTNLPHDKFLWTTSQKNDGWVPIQTIANFKRMRRF-QPLEAIVNALRKSPE-LLEVDEA 133

Query: 492 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFA--KDASLDDLLTYFXQFSG 644
            +KVRR    PL  ++    K +  RS+Y KGF   KD +   L  +F + +G
Sbjct: 134 GEKVRR--MIPLVRVD---NKSVMERSVYCKGFGDEKDDTQIALEKFFEENAG 181


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = +3

Query: 294 QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGL 473
           Q+EYYF   NL +D FL++ +  D+G+VPL  L  FNR+   + D +++  A     S +
Sbjct: 332 QLEYYFSIENLCKDMFLRKHMD-DEGYVPLAFLASFNRIKSFSTDLNLLHAAC--KASDI 388

Query: 474 LEVSED 491
           ++V+ D
Sbjct: 389 IDVAID 394


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 222 NGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDD 368
           NG   + + E  E+E  +  + +  ++      N HR++FL E + +D+
Sbjct: 194 NGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDE 242


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
 Frame = +3

Query: 249 ENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTED 428
           +N++++ ++ +    Q+    GDV  +  KFL +++   +  + L  LT  + + K  + 
Sbjct: 20  KNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVKNCKT 79

Query: 429 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE--ELRKEICNRSIYAKGFAKDA 602
           + V   +    T  LL+++ D+    R   +    +NE  E+ K+  N S+      K  
Sbjct: 80  SIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIR 139

Query: 603 SLD 611
            LD
Sbjct: 140 KLD 142


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 585 LWRKLICCIFLYEAPRSFLAVAVLDYVSLFCYLQ 484
           LW +  C   L E  R+ +    L Y SLFC+ Q
Sbjct: 199 LWAENTCSFRLAELLRNSIGDTQLQYYSLFCFWQ 232


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
 Frame = +3

Query: 150 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETEL-DIAIIRQVEYYFGDVNL 326
           S +E+ + +PE + T  +  T E   +EE  + E  E+E E+ +     ++E   GD++L
Sbjct: 331 SEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESENELEDKVGDLSL 390

Query: 327 H---RDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVI 440
                  F+ E ++ +   +  E  +    L K +E T+++
Sbjct: 391 SLGVASSFVDEMLR-ERNNLSAEGTSASPSLDKKSESTNIV 430


>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1021

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +3

Query: 198  DKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQ-IKLDDGW 374
            +K ++ E   ++++AK+E+ + + E+  ++  ++  +F   +L  +   Q+  I     +
Sbjct: 886  EKGLSTEQRDEKKHAKVESFQRQ-EMPRSLFEEI--FFAIDSLTPNPQQQDTVINAVPTF 942

Query: 375  VPLETLTKFNRLAKLTEDTDVIANALNKS 461
             P   +TKFN+  K+   T  +  A  +S
Sbjct: 943  APYNAMTKFNQKVKVMPGTGKVGKAARES 971


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = +3

Query: 153 IKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHR 332
           ++E      ++++  D E   +T  ++ + K+E  E+E E +  ++R+        ++  
Sbjct: 57  LEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKA 116

Query: 333 DKFLQEQIKL----DDGWVPLETLTKFNRLAKLTEDTDVIANAL 452
           + F +    L    DD    LE +T  ++  K+  + D +  AL
Sbjct: 117 EHFERRVQSLERERDDMEQKLEEMT--DKYTKVKAELDEVHQAL 158


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 156 KESHRVIPEIKMTEDKEVTVETN-GQEENAK-IENSEDETELDIAIIRQV 299
           +E+   + E ++ ED++V +ET+  QEE  K IEN + E     A  ++V
Sbjct: 241 EEAVEAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEVTFISADTKKV 290


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 492 NKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 608
           N  V R         N++  KE+ NR +  KGFA D S+
Sbjct: 543 NSAVLRRQSSQSSGANDD--KEVRNRKVVEKGFANDCSV 579


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 24/131 (18%), Positives = 58/131 (44%)
 Frame = +3

Query: 150 SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLH 329
           ++++     P++     + V ++ N ++E ++  N +DE E+D +    +       N  
Sbjct: 38  AVEDGTGTSPDLNFFSTQNV-MQMNFEDEYSEFSNEDDEAEIDNSFADSIP------NEP 90

Query: 330 RDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRR 509
               +Q++   D      +++ + N      ED  V   ++    S +  + +DN +   
Sbjct: 91  EIPDMQDEYSRDSH--SQQSVEEQNNTTNTDEDASVNEFSVAADISDVNTLGKDNSE--- 145

Query: 510 NPEQPLPEMNE 542
           + E+P+ E+NE
Sbjct: 146 STEEPVNEVNE 156


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 105 LRSLNKLAF*NQKVF----SIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDE 266
           L S+N+ AF + K      SI  S        + ED  V +    +E N + EN+EDE
Sbjct: 432 LGSINEQAFEDSKDLNDTNSITGSSPTEESNALVEDTSVDISATLEEANTQQENAEDE 489


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 156 KESHRVIPEIKMTEDKEVTVETNGQEENAKIENSED 263
           K SH+   ++K  +DK  +    G+ E AK+   ED
Sbjct: 55  KASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEED 90


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 367 SSNFICSCRNLSRC 326
           S NF+CSCR  S C
Sbjct: 7   SRNFLCSCRGFSVC 20


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 218 FNSYLFVLSHFDFWNNTMRFFNGKYLLISES 126
           F+SY  V+  F  +NNT  FF G  ++ + S
Sbjct: 132 FSSYQSVIDTFQKYNNTGAFFAGNEVVNNAS 162


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 348 EQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNK 458
           E+++LD  W    T+ +F  L    E  D ++  +NK
Sbjct: 611 EKVRLDRSWKDALTINEFFTLKNAVEKQDNVSFHVNK 647


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 372 IHHLILFVLAEIYLDVDLHHQNNIRLA 292
           I +++ F    +Y+D+D+HH + ++ A
Sbjct: 177 ILNMLRFFPRVLYIDIDIHHGDGVQQA 203


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 141 KVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETE 272
           K F +K + R + E+K + D+E +V+   +E+ +K E+ + + +
Sbjct: 44  KAFLLKMAKRSVEELKRSADEEASVKR--KEKKSKHEHKKHKKD 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,094
Number of Sequences: 5004
Number of extensions: 54580
Number of successful extensions: 192
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)