Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m11
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)                   70   1e-12
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    58   6e-09
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      50   2e-06
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         30   2.0  
SB_15630| Best HMM Match : p450 (HMM E-Value=0)                        30   2.0  
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   29   2.6  
SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)                     29   3.4  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.5  
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_21866| Best HMM Match : UCH (HMM E-Value=0)                         28   6.0  
SB_32578| Best HMM Match : Methyltransf_2 (HMM E-Value=2.2e-17)        28   7.9  

>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
          Length = 349

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 30/75 (40%), Positives = 51/75 (68%)
 Frame = +3

Query: 405 RLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAK 584
           ++  +++D + +A  + KS+S L+EVSED  KVRR   +P+ E+  E R++   +++Y K
Sbjct: 26  QIESMSDDVNFLAKTMKKSSSDLIEVSEDLTKVRRTKSKPVEELTTEARQKAKAKTVYVK 85

Query: 585 GFAKDASLDDLLTYF 629
           GF K+A+LD+L  YF
Sbjct: 86  GFPKEATLDELQEYF 100


>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 26/60 (43%), Positives = 40/60 (66%)
 Frame = +3

Query: 261 DETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVI 440
           DE  L   I RQ+EYYF + NLH+D FL++Q+  D+G++P+  +  F R+  LT D ++I
Sbjct: 117 DEKTLQEYIKRQIEYYFSEANLHKDFFLRKQMD-DEGYIPIALIASFYRVQALTHDMNLI 175


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/57 (35%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = +3

Query: 294 QVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLETLTKFNRLAKLTEDTDVIANALNKS 461
           Q+++YF D  L +D+FL++QI+   DG+V + T+  FN++ ++T+D  ++  A+  S
Sbjct: 32  QIDFYFSDSALLKDRFLKQQIENHPDGYVAISTIASFNKIKQMTDDIKLVKKAMKLS 88


>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1358

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +3

Query: 135 NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYF 311
           N+K  S  +  R   + ++   +E+ +E   + ENA+ +  E+E E ++A+ ++VE  F
Sbjct: 59  NEKELSYIQEWRSKAKAEIQPFREMRLEIKKRLENARDQEKEEEMEKELAMKKKVERRF 117


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 186 KMTEDKEVTVETNGQEENAKIENSEDE 266
           K+T+DK+V  E    EE  K+E+  D+
Sbjct: 742 KLTQDKDVETENKNNEEKEKLEDDADQ 768


>SB_15630| Best HMM Match : p450 (HMM E-Value=0)
          Length = 965

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 32  TAKHVFFNLKVISIKFSGLTLYILTSKPQ*TCFLKSEGIFH*RISSCYSR 181
           T + VF   +  SI +S  T+Y+L +  +    L  + ++H R S  YSR
Sbjct: 715 TVRKVFITHRAQSIYYSRCTMYLLLTVHKVFITLGEQSLYHSRCSKDYSR 764


>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +3

Query: 345 QEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP 524
           Q+   +D  W+P ET T+F     +T D  V  N       G ++V + ++K   N E P
Sbjct: 314 QQDGDIDYEWLPKETTTEFEN-TLITADHRV--NMTTGGEEGTIQVEDTSEK--ENLEPP 368

Query: 525 LPEMNEELRK 554
             ++  E +K
Sbjct: 369 AKKLRTEAKK 378


>SB_7622| Best HMM Match : Arfaptin (HMM E-Value=0)
          Length = 641

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +3

Query: 105 LRSLNKLAF*NQKVFSIKESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIA 284
           L+SLN L   N+K   IKE H    + +   DK+ T E  G+   AK  N +D+ + D  
Sbjct: 294 LKSLNPLVTDNEKNDEIKEVHL---DQETHVDKKDT-ENAGEATEAKRSNDDDDDDDDDT 349

Query: 285 II 290
           +I
Sbjct: 350 LI 351


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = +3

Query: 294  QVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANA 449
            QVE    DVN H+ +FLQE   L    VP  T    + +    ED D+  NA
Sbjct: 886  QVEVNVIDVNDHKPEFLQESYWLS---VPSSTPAGSSLVTVQAEDMDIGTNA 934


>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 1/134 (0%)
 Frame = +3

Query: 156 KESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRD 335
           KE  RV  E K    +   V    +  N + E    + E       Q+      +N  R 
Sbjct: 458 KERERVNKERKRANKETERVNKETERVNKERERVNKKKERLNKEKEQLNKEKEQLNKERK 517

Query: 336 KFLQEQIKLDDGWVPLETLTKFN-RLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRN 512
           +  +E+ +++      E L K   RL K TE  D     LNK    L +  E   KVR+ 
Sbjct: 518 RLNKERKRVNK---ERERLNKEKERLNKETERLDKTRERLNKERKRLNKKKERLNKVRKR 574

Query: 513 PEQPLPEMNEELRK 554
             +    +N+E+ +
Sbjct: 575 LNKEKERLNKEMER 588


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 168  RVIPE-IKMTEDKEVTVETNGQEENAKIENSE 260
            RV+ E I+ T+DK   V  NGQE +A+I   E
Sbjct: 2700 RVLHEPIETTQDKGERVPVNGQESSARINEQE 2731


>SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 411 AKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQP--LPEMNEELRKEICNRSIYAK 584
           A++    +VIA   N  T    +  ED+++    PE P  L E NE L +E+    +  +
Sbjct: 160 ARIGGHKEVIAIIKNAPTVATWDAGEDSEEEEEEPEIPNELEEENEVLNQELGKLRVQHQ 219

Query: 585 GFAKDASLDDLLT 623
                 S+++ LT
Sbjct: 220 KTLDRGSIEEDLT 232


>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
          Length = 2165

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +3

Query: 159  ESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDK 338
            ES   I     +E+    +ET G E   K   ++++    + ++RQ++Y FG ++  + +
Sbjct: 1307 ESESTIDTGYHSEESSKDLETQGGEARDK---AQEQKNYQVNVLRQIQYIFGHLSQSQLQ 1363

Query: 339  F 341
            F
Sbjct: 1364 F 1364


>SB_32578| Best HMM Match : Methyltransf_2 (HMM E-Value=2.2e-17)
          Length = 298

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 342 LQEQIKLD-DGWVPLETLTKFNRLAKLTEDTDVIANALNK 458
           L+   KLD +G+V    LTK+ R+  L   T  IA A+NK
Sbjct: 106 LRGSSKLDAEGFVTAFDLTKYKRICDLGGATGEIAQAVNK 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,300,966
Number of Sequences: 59808
Number of extensions: 352947
Number of successful extensions: 1562
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)