Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m11
(669 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 77 1e-14
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 77 1e-14
At5g66100.1 68418.m08327 La domain-containing protein similar to... 60 2e-09
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 58 4e-09
At2g43970.2 68415.m05468 La domain-containing protein contains P... 58 5e-09
At2g43970.1 68415.m05467 La domain-containing protein contains P... 58 5e-09
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 58 7e-09
At5g21160.1 68418.m02528 La domain-containing protein / proline-... 57 1e-08
At1g79880.1 68414.m09333 La domain-containing protein contains P... 54 9e-08
At4g35890.1 68417.m05097 La domain-containing protein contains P... 46 2e-05
At3g61570.1 68416.m06896 intracellular protein transport protein... 33 0.17
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 32 0.40
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 31 0.69
At5g60520.1 68418.m07589 late embryogenesis abundant protein-rel... 31 0.69
At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family... 30 1.6
At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate dehy... 29 2.1
At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate dehy... 29 2.1
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 29 2.8
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 29 3.7
At4g36030.1 68417.m05129 armadillo/beta-catenin repeat family pr... 28 4.9
At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate dehy... 28 4.9
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu... 28 4.9
At1g76740.1 68414.m08931 expressed protein weak similarity to fi... 28 4.9
At3g22790.1 68416.m02873 kinase interacting family protein simil... 28 6.5
At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1) domain... 28 6.5
At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr... 28 6.5
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot... 28 6.5
At5g15430.1 68418.m01806 calmodulin-binding protein-related has ... 27 8.5
At5g05490.2 68418.m00593 cohesion family protein SYN1, splice va... 27 8.5
At5g05490.1 68418.m00592 cohesion family protein SYN1, splice va... 27 8.5
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 27 8.5
At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SD... 27 8.5
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 27 8.5
At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing p... 27 8.5
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 76.6 bits (180), Expect = 1e-14
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Frame = +3
Query: 270 ELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLETLTKFNRLAKLTEDTDVIAN 446
EL+ IIRQVEYYF D NL DKFL +K + G+VP+ T+ F+++ KLT D +I +
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161
Query: 447 ALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 542
AL +S+ L VS D KKV+R PLPE+ +
Sbjct: 162 ALKESS--FLVVSADEKKVKR--LSPLPEIRD 189
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 76.6 bits (180), Expect = 1e-14
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Frame = +3
Query: 270 ELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLETLTKFNRLAKLTEDTDVIAN 446
EL+ IIRQVEYYF D NL DKFL +K + G+VP+ T+ F+++ KLT D +I +
Sbjct: 102 ELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVS 161
Query: 447 ALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNE 542
AL +S+ L VS D KKV+R PLPE+ +
Sbjct: 162 ALKESS--FLVVSADEKKVKR--LSPLPEIRD 189
>At5g66100.1 68418.m08327 La domain-containing protein similar to
SP|P40796 La protein homolog (La ribonucleoprotein) (La
autoantigen homolog) {Drosophila melanogaster}; contains
Pfam profile PF05383: La domain
Length = 453
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/59 (47%), Positives = 38/59 (64%)
Frame = +3
Query: 285 IIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKS 461
I+ QVEYYF NL RD+ L++Q+ D+GWVP+ + F RLA+LT + I AL S
Sbjct: 339 ILTQVEYYFSADNLSRDEHLRDQMN-DEGWVPVRVIAAFRRLAELTNNIQTILEALRSS 396
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 58.4 bits (135), Expect = 4e-09
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Frame = +3
Query: 285 IIRQVEYYFGDVNLHRDKFLQEQI-KLDDGWVPLETLTKFNRLA-----------KLTED 428
++RQVE+YF D NL D FL++ + + +DG V L + F+++ + ED
Sbjct: 14 VLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPED 73
Query: 429 TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASL 608
T + A A TS L++S+D KKV R+ E L ++ E+L +++ R++ A F+ D
Sbjct: 74 T-IKAVADTLRTSSALKISDDGKKVGRSTE--LLKL-EDLIEQLNARTVAASPFSYDVKR 129
Query: 609 DDLLTYFXQF 638
+D+ ++F Q+
Sbjct: 130 EDVESFFSQY 139
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 58.0 bits (134), Expect = 5e-09
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Frame = +3
Query: 285 IIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLETLTKFNRLAKLTEDTDVIANALNKS 461
I+ QVEYYF D+NL L I D +G+VP+ + F ++ + + +A L S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256
Query: 462 TSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLTYF 629
L VSED KKVRR + + E +E+ +R I A+ +D +L+ F
Sbjct: 257 AK--LFVSEDGKKVRR-----ISPITESAIEELQSRIIVAENLPEDHCYQNLMKIF 305
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 58.0 bits (134), Expect = 5e-09
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Frame = +3
Query: 285 IIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLETLTKFNRLAKLTEDTDVIANALNKS 461
I+ QVEYYF D+NL L I D +G+VP+ + F ++ + + +A L S
Sbjct: 197 IVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQNS 256
Query: 462 TSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLTYF 629
L VSED KKVRR + + E +E+ +R I A+ +D +L+ F
Sbjct: 257 AK--LFVSEDGKKVRR-----ISPITESAIEELQSRIIVAENLPEDHCYQNLMKIF 305
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 57.6 bits (133), Expect = 7e-09
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Frame = +3
Query: 270 ELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLD-DGWVPLETLTKFNRLAKLTEDTDVIAN 446
+L + I++QVEY F D++L ++ + + I D +G+VP+ + ++ LT + +++
Sbjct: 143 DLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSL 202
Query: 447 ALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDASLDDLLTY 626
AL S+ L VSED KKV+R + + R+E+ R++ A+ D S +L
Sbjct: 203 ALRSSSK--LVVSEDGKKVKRT-----SQFTDRDREELQGRTVVAENLPDDHSYQNLEKI 255
Query: 627 F 629
F
Sbjct: 256 F 256
>At5g21160.1 68418.m02528 La domain-containing protein /
proline-rich family protein contains proline-rich
extensin domains, INTERPRO:IPR002965, PF05383: La domain
Length = 826
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +3
Query: 255 SEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTD 434
S ++ +L +++QVEYYF D NL D +L + ++GWVP + + F R+ +T D D
Sbjct: 272 SPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMD-EEGWVPTKIIAGFKRVKAMTMDVD 330
Query: 435 VIANALNKSTSGLLEVSEDNKKVR 506
I AL S S +EV D + R
Sbjct: 331 FIVYALGFSNS--VEVQGDQIRKR 352
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 54.0 bits (124), Expect = 9e-08
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Frame = +3
Query: 285 IIRQVEYYFGDVNLHRDKFLQEQI-KLDDGWVPLETLTKFNRLAKL-------TED---- 428
++ QVE+YF D NL D FL ++ K DG V L + F+R+ L ED
Sbjct: 13 LLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINREDIPPR 72
Query: 429 -TDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDAS 605
+ +AN L TS L+VS + +++ R + P EE+ +++ R++ A F
Sbjct: 73 IVEEVANLLR--TSDFLKVSNNGQRIGRGTKLSKP---EEVLEQVHRRTLAASPFEYSIK 127
Query: 606 LDDLLTYFXQFS 641
++D+ ++F Q++
Sbjct: 128 MEDVSSFFSQYA 139
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = +3
Query: 273 LDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANAL 452
L + + +Q++YYF D NL D +L+ + ++G+VPL + F ++A+LT++ I AL
Sbjct: 369 LHMKLHKQIQYYFSDENLITDIYLRGFMN-NEGFVPLRVVAGFKKVAELTDNIQQIVEAL 427
Query: 453 NKSTSGLLEVSEDNKKVRRN 512
S +EV D + R N
Sbjct: 428 QNSPH--VEVQGDFIRKRDN 445
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 33.1 bits (72), Expect = 0.17
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +3
Query: 228 QEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNR 407
+ +N ++ N + A I E++ ++ + +D+ ++ +L D LE+ K
Sbjct: 455 ESKNVELLNLQTALGQYYAEIEAKEHFERELAMAKDELMKLSARLKDSDERLESSNKEKE 514
Query: 408 --LAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMN 539
+KL V A N+ T +V EDN KVRR EQ + +N
Sbjct: 515 DVTSKLLHAEKVAAEWKNRVT----KVEEDNAKVRRVLEQSMTRLN 556
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 525 LPEMNEELRKEICNRSIYAKGFAKDASLDDLLTYFXQFSG 644
LP +E +E+C+R+IY K+A+ DD+ T+F G
Sbjct: 213 LPRSEDE--REMCSRTIYCTNVDKNATEDDVNTFFQSACG 250
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 31.1 bits (67), Expect = 0.69
Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +3
Query: 174 IPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAI--IRQVEYYFGDVNLHRDKFLQ 347
+PE + +E +E++ GQ+++ IE +++ + + + + Q++ + ++
Sbjct: 302 LPEDEQSEWREIS----GQKKDIIIERTDERNSVRVLVSDLVQMDIRVRPIGKEENRVHN 357
Query: 348 EQIKLDDGWVPLETLTKFNRLAKLTE 425
Q+ DD + LET KF L++L E
Sbjct: 358 YQLPQDDAFAHLETQFKFLDLSELVE 383
>At5g60520.1 68418.m07589 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 338
Score = 31.1 bits (67), Expect = 0.69
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 180 EIKMTEDKEVTVETNGQEENAKIENSEDETELDIAI--IRQVEYYFGDVNLHRDKFLQEQ 353
E+++ + E + E +E +++ + + + I Q++ + D+ + Q
Sbjct: 199 EVEVPTEGEAEWRIDLDEREVIVERTDERNNVRVTVSGIVQIDIQVRPIGKEEDRVHKYQ 258
Query: 354 IKLDDGWVPLETLTKFNRLAKLTE 425
+ DD + LET KF L+ L E
Sbjct: 259 LPKDDAFAHLETQFKFFNLSDLVE 282
>At3g13200.1 68416.m01652 Cwf15 / Cwc15 cell cycle control family
protein contains Pfam profile PF04889: Cwf15/Cwc15 cell
cycle control protein; similar to Cell cycle control
protein cwf15 (Swiss-Prot:P78794) [Schizosaccharomyces
pombe]
Length = 230
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +3
Query: 168 RVIPEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAIIRQVEYYFGDVNLHRDK 338
R+IP +D +V ++++ ++ ++ ED+TE +A + Q++ + L ++K
Sbjct: 102 RIIPRSVDADDSDVDIKSDDDSDDESDDDDEDDTEALMAELDQIKKERVEERLRKEK 158
>At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 282 AIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANAL 452
A ++ VE GD L+ D+ L++ L+ PL L L + D D++ N L
Sbjct: 110 AYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGL 166
>At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 282 AIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANAL 452
A ++ VE GD L+ D+ L++ L+ PL L L + D D++ N L
Sbjct: 110 AYLKYVEARLGDRTLYADEILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGL 166
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 540 EELRKEICNRSIYAKGFAKDASLDDLLTYFXQFSGS*ECN 659
E ++I R+I+ +GF D + ++L T F + EC+
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECS 438
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 426 DTDVIANALNKSTS--GLLEVSEDNKKVRRNPEQP--LPEMNEELRKEICNRSIYAKGFA 593
D + ALN S + G V K P P LP +E +E+C R+IY
Sbjct: 221 DEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDE--REMCARTIYCTNID 278
Query: 594 KDASLDDLLTYFXQFSG 644
K + D+ +F F G
Sbjct: 279 KKVTQSDVKIFFESFCG 295
>At4g36030.1 68417.m05129 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 670
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 75 NSLALPCIS*LRSLNKLAF*NQKVFSIKESHRVIPEIKMTEDKE 206
+ L +PC+ RS+ LA + F E+H ++P +K+ +D E
Sbjct: 516 SDLLIPCV---RSIGNLA----RTFKSAETHMIVPLVKLLDDGE 552
>At3g07690.1 68416.m00923 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 455
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +3
Query: 282 AIIRQVEYYFGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKS 461
A ++ VE GD L+ D+ L++ L+ PL L L + D D++ N L S
Sbjct: 102 AYLKYVEARLGDRVLYADEILKDGFCLNMIETPLCPLKVVTNLQEAVWDADIVINGL-PS 160
Query: 462 TSGLLEVSEDNKKVRRNPEQPL 527
T +E +K + P+
Sbjct: 161 TETFQVFNEISKYWKERVNAPV 182
>At1g80010.1 68414.m09362 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 696
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 423 EDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKGFAKDA 602
+D+D+ ALN+ G L+V E + NE +R +R ++A + KD
Sbjct: 395 QDSDLFPMALNRVVYGCLKVEEFETAWEEMIIRFGMTNNETIRDMFQDRELWAPVYLKDT 454
Query: 603 SLDDLLTY 626
L LT+
Sbjct: 455 FLAGALTF 462
>At1g76740.1 68414.m08931 expressed protein weak similarity to
fimbriae-associated protein Fap1 (GI:3929312)
[Streptococcus parasanguinis]; weak similarity to 1MDa_1
protein (GI:24620455) [Caenorhabditis elegans]
Length = 1532
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 408 LAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEICNRSIYAKG 587
L K TE T +L++ + +LE KKVR +PE + E L++ C R +K
Sbjct: 37 LQKETEGTLTDTISLSEDSVDVLEDDVAVKKVRFSPENEVFEFTRSLKR--CQRKYVSKR 94
Query: 588 FAKDASLD 611
+++ ++
Sbjct: 95 KVQESGIE 102
>At3g22790.1 68416.m02873 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 384 ETLTKFNRLAKLTEDTDVIAN-ALNKSTSGLLEVSEDNKKVRRNPEQPLPEMNEELRKEI 560
E+L + N L L E ++ L + LLE +E+ K N L E EELRK+
Sbjct: 1139 ESLEEANELNDLLEHQILVKEETLRQKAIELLE-AEEMLKATHNANAELCEAVEELRKD- 1196
Query: 561 CNRSIYAKG 587
C S KG
Sbjct: 1197 CKESRKLKG 1205
>At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein contains Pfam profiles PF00564:
PB1 domain, PF00515: TPR Domain
Length = 751
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 309 FGDVNLHRDKFLQEQIKLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSE 488
F LH L ++I + GW P ETL F+ +D + L + L+
Sbjct: 582 FEMAKLHWSYLLAQKIDIS-GWDPSETLNLFDSAEAKMKDATEMWEKLEEQRMDDLKNPN 640
Query: 489 DNKK--VRRNPEQPLPEMNEELRKEI 560
NKK V + ++ + NEE+ + I
Sbjct: 641 SNKKEEVSKRRKKQGGDGNEEVSETI 666
>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1035
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 415 LARRLNFVRVSNGTHPSSNFICSCR-NLSR-CRFTS 314
L R+ NFV S P+SN C C N S CR T+
Sbjct: 57 LDRKWNFVAESTSKLPTSNITCDCTFNASSVCRVTN 92
>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
similar to SP|P13709 Female sterile homeotic protein
(Fragile-chorion membrane protein) {Drosophila
melanogaster}; contains Pfam profile PF00439:
Bromodomain
Length = 487
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 135 NQKVFSIKESHRVIPEIK-MTEDKEVTVETNGQEENAKIENSEDETELDI 281
N + +++E R+ E++ + DK TV ++ N ++ +DE ELDI
Sbjct: 326 NNRDLTLEEKRRLSEELQDLPYDKLETVVQIIKKSNPELSQKDDEIELDI 375
>At5g15430.1 68418.m01806 calmodulin-binding protein-related has
weak similarity to calmodulin-binding proteins
Length = 478
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/37 (24%), Positives = 25/37 (67%)
Frame = +3
Query: 177 PEIKMTEDKEVTVETNGQEENAKIENSEDETELDIAI 287
P+ + ++DK +ET ++E+++ E E+E + ++++
Sbjct: 293 PKSEKSQDKGECIETEHEDESSQEEEDEEEEDENVSV 329
>At5g05490.2 68418.m00593 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 617
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 171 VIPEIKMTEDKEVTVETNGQEENAKIENSEDETELD 278
++PE + T DKE+ ET + + N DE D
Sbjct: 514 MLPEKRFTADKEILFETASTQTQKPVCNQSDEMITD 549
>At5g05490.1 68418.m00592 cohesion family protein SYN1, splice
variant 1 (SYN1) identical to SYN1 splice variant 1
[Arabidopsis thaliana] GI:6453715
Length = 627
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 171 VIPEIKMTEDKEVTVETNGQEENAKIENSEDETELD 278
++PE + T DKE+ ET + + N DE D
Sbjct: 524 MLPEKRFTADKEILFETASTQTQKPVCNQSDEMITD 559
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.5 bits (58), Expect = 8.5
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 414 KLTEDT-DVIANALNKSTSGLLEVSEDNKKV--RRNPEQPLPEMNEELRKEICNRSIYAK 584
KL+E + +V+ N ++T EVS D+ + R N EQP + EE+ KE + K
Sbjct: 387 KLSESSSEVVEN--QQTTEDTTEVSADSASMDDRSNAEQP--KEKEEVEKEKAKDTKKEK 442
Query: 585 GFAKDA 602
G KD+
Sbjct: 443 GKEKDS 448
>At2g24190.1 68415.m02890 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 296
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/76 (19%), Positives = 40/76 (52%)
Frame = +3
Query: 357 KLDDGWVPLETLTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEM 536
++ + ++PL L+ R+ ++ + N +N+ G+L +E+ +VR +Q + ++
Sbjct: 142 RMCEAFIPLLQLSDSPRIINVSSFMGQVKNLVNEWAKGILSDAENLTEVR--IDQVINQL 199
Query: 537 NEELRKEICNRSIYAK 584
+L+++ +AK
Sbjct: 200 LNDLKEDTAKTKYWAK 215
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 159 ESHRVIPEIKMTEDKEVTVETNGQEENAKIENSEDETE 272
E + E + E + T T+G E + EN+E++TE
Sbjct: 1817 EGENLAKEPAIDELMDATTTTDGDNEETEAENAEEKTE 1854
>At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 372
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 246 IENSEDETELDIAIIRQVEYYFGDVNLHRDKFLQEQI 356
+ +S+ ET ++ RQ+E YFG + F++EQI
Sbjct: 15 LRSSDLETTTPASVRRQLEVYFGVELTDKKAFVREQI 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,201,784
Number of Sequences: 28952
Number of extensions: 264759
Number of successful extensions: 969
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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