Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m10
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   1.6  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   1.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   1.6  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    27   1.6  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   3.6  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   4.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.3  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 342 SNLARAI-DKLPVAPHYLQETLKHEP 416
           +++ARA+ +KL V P+YLQ T+ H P
Sbjct: 853 TDMARAVANKLNVDPNYLQFTMAHLP 878


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 429 EAAKFEPKYEIEPYYTGEPVPLSNSKYI 512
           E  +FE +  IEP YTG PV   +++ I
Sbjct: 6   EKKRFELEKSIEPIYTGGPVAFDSNEKI 33


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 485  GAVVQFKVHWFL*AECFPRV*LXCETIFSIPR 580
            G V  F+  WFL A  F +  L C  IF+I R
Sbjct: 1622 GLVFTFEALWFLEAWSFSKTVLGCIVIFAIHR 1653


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 583 PPWDREDRLAXESYARKTFGS*EPMYFELDNGTGSPV*YGSISYFGSNLAASRT 422
           P  D ++ L   + A    G+ +P+  E+D G+GS +  G  S+   +L A ++
Sbjct: 346 PSLDADEVLRSFNLANDPIGAVDPLTLEIDQGSGSQL-LGQQSFANDSLNAKQS 398


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 EIISNLARAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYY 473
           + I+  +  +DK    PH +         ++ E AKF PK +IE YY
Sbjct: 421 QTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAKFCPKLKIELYY 467


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 286 CSAMAKLFSTFGSNAVCF 233
           C A+A+ F  FG N  CF
Sbjct: 462 CVALAQFFFNFGPNTTCF 479


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 172 HQSTAQLSRQPSHPRHVK*PQNRQHWIR 255
           H+ +  L RQPS P  V     R H+IR
Sbjct: 876 HEGSNDLERQPSSPDTVHPGIKRSHFIR 903


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 333  EIISNLARAIDKLPVAPHYLQETL 404
            E+ +NLA AID+LP++ +Y    L
Sbjct: 1208 ELENNLALAIDRLPLSRNYFNAGL 1231


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 EIISNLARAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYY 473
           ++++  A  +++    PH +         ++ E A+F P   +EPYY
Sbjct: 584 QVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYY 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,440
Number of Sequences: 5004
Number of extensions: 40164
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)