Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m10
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)                30   1.2  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  29   2.1  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.8  
SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)                 29   2.8  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   6.5  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                27   8.6  

>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
          Length = 556

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 354 RAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKY 509
           + +D L    HYL  ++++ PK   E AK  PKY      T E  P S   Y
Sbjct: 453 KKLDFLTNIVHYLSNSVRNVPKGKEELAKLIPKYHEIMIKTIEQDPSSEKSY 504


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 175 QSTAQLSRQPSHPRHVK*PQNRQHWIRT 258
           +S  QL RQPS P H +    RQH  RT
Sbjct: 275 ESLDQLERQPSSPSHSRSSGGRQHACRT 302


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 576  GIEKIVSHXSHTRGKHSAHKNQCTLNWTTAPVPLCNT 466
            G ++ VS   H  G+   H+N C+L++T    P+C T
Sbjct: 5533 GTDEGVSEVLHVAGEKRLHRNTCSLDYT----PVCGT 5565


>SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 357 AIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKY 455
           A D    +P+Y  +   H P Y L+A+   P Y
Sbjct: 203 APDAFAHSPNYAPDAFAHSPNYALDASAHSPNY 235


>SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)
          Length = 773

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 357 AIDKLPVAPHYLQETLKHEPKYVLEAAKF---EPKYEIEPYYTGEPVPLSNSKYIGSY 521
           A+ +L  A   L + L++EP    E +     EP  E EP Y+ +P  LS  KY+GS+
Sbjct: 340 AVSRLKEANDELVQALRYEPVQEEEKSTEDLQEPPQE-EPTYSRDP--LSQGKYLGSF 394


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 447 PKYEIEPYYTGEPVPLSNSKYI 512
           P Y+IEP Y G  +P+  + Y+
Sbjct: 201 PSYDIEPSYNGNSLPMIKNLYV 222


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 354 RAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKY 509
           + +D L    HYL +++++  K   E AK  PKY      T E  P S   Y
Sbjct: 528 KELDFLTNIVHYLSDSVRNVHKGKEELAKLIPKYHEIMIKTIEQDPSSEKSY 579


>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +3

Query: 381 PHYLQETLKHEPKYVLEAAKFEPKYEIEPYYTGEPVPLS-----NSKYIGSYEP 527
           P Y+      EP+Y+      EP+Y I P  T EP  +S       +YI   EP
Sbjct: 349 PQYIAPQETQEPQYIAPQETQEPQY-IAPQETQEPQYISPQETQEPQYIAPQEP 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,023
Number of Sequences: 59808
Number of extensions: 307888
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)