Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m10
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    29   0.045
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.98 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   6.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 91  PMSPLRPIT*SQEFHIQLIQLP-IHP--GQHQSTAQLSRQPSHPRHVK*PQNRQ 243
           P SP  P+  SQ  H    Q P + P  GQHQS AQ     +H +H+   Q +Q
Sbjct: 158 PDSP--PLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQ 209


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 251 IQCCLFWGYFTWRGCDGW 198
           ++ C   G F+W G DGW
Sbjct: 361 VKRCNATGAFSWIGSDGW 378


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +3

Query: 405 KHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKY 509
           +H P+Y      FEP+     +Y       SN  Y
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENY 188


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 27 VVMSSLIFVISIF 65
          +V+ S+IFVIS F
Sbjct: 56 IVLGSIIFVISFF 68


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 387 YLQETLKHEPKYVLEAAKFEPK 452
           Y++ +  HE K VLE +K + K
Sbjct: 67  YIKYSHTHEKKLVLERSKTKSK 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,991
Number of Sequences: 438
Number of extensions: 3137
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)