Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m08
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                        132   2e-31
03_04_0027 + 16593133-16593573                                        126   1e-29
02_01_0563 + 4134954-4135388                                          123   7e-29
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021...    27   6.3  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     27   6.3  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    27   8.3  
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451...    27   8.3  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score =  132 bits (318), Expect = 2e-31
 Identities = 63/148 (42%), Positives = 87/148 (58%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDXYHPGYFGKLGMRN 211
           M TS +K RK RGHVS                 NAGG HHHRI  D YHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 212 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKLPKQ 391
           FH  +NK + P +N+++LW++V  +   + A A  GK P++++ + GY+ +LGKG LP++
Sbjct: 61  FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118

Query: 392 PVIVXXXXXXXXXXXXIXDVGGACVLSA 475
           P++V            I   GGA VL+A
Sbjct: 119 PIVVKAKLISKVAEKKIKAAGGAVVLTA 146


>03_04_0027 + 16593133-16593573
          Length = 146

 Score =  126 bits (304), Expect = 1e-29
 Identities = 66/149 (44%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDXYHPGYFGKLGMRN 211
           M T  KK RK RGHVS                 NAGG HHHRI  D YHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 212 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKLPKQ 391
           FH   N+  CP +N+++LW++V      K A A  GK PVI++ + GY  +LGKG LP Q
Sbjct: 61  FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117

Query: 392 -PVIVXXXXXXXXXXXXIXDVGGACVLSA 475
            P++V            I   GGA +L+A
Sbjct: 118 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 146


>02_01_0563 + 4134954-4135388
          Length = 144

 Score =  123 bits (297), Expect = 7e-29
 Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDXYHPGYFGKLGMRN 211
           M T  KK RK RGHVS                 NAGG HHHRI  D YHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 212 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKL-PK 388
           FH   N+  CP +N+++LW++V  +     A A  GK PVI++ + GY  +LGKG L P+
Sbjct: 61  FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115

Query: 389 QPVIVXXXXXXXXXXXXIXDVGGACVLSA 475
           +P++V            I   GGA +L+A
Sbjct: 116 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 144


>09_04_0302 +
           16501020-16501049,16501568-16501659,16502063-16502198,
           16502297-16502727,16502950-16503028
          Length = 255

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 158 FCDGAHHQHYHDLLDAYG 105
           +C+G HH H H   D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 141 PPALPRPPGCLRCFPIRPCP 82
           PPA P PP  L C P+ P P
Sbjct: 10  PPAPPSPPPALPCDPMPPPP 29


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 144 SPP-ALPRPPGCLRCFPIRPCP 82
           SPP  LP PPG   C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284


>02_03_0080 +
           14935664-14935796,14943858-14944175,14944352-14945199,
           14945249-14945521
          Length = 523

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 227 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKLPKQP 394
           +K  C +    ++ TL  E+ RL  ++A +G+VP   + K+G      K K+P  P
Sbjct: 454 DKESCEMAQFREI-TLDREEIRLAASTASEGEVPATKMPKSGASDTKTK-KIPLDP 507


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,834,301
Number of Sequences: 37544
Number of extensions: 257111
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)