Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m08
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   152   2e-37
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    85   4e-17
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lecti...    28   4.3  
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    27   7.5  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    27   7.5  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation r...    27   9.9  
U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation r...    27   9.9  
AF082011-1|AAD03023.1|  467|Caenorhabditis elegans UDP-N-acetylg...    27   9.9  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  152 bits (368), Expect = 2e-37
 Identities = 73/148 (49%), Positives = 92/148 (62%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDXYHPGYFGKLGMRN 211
           MA + +KTRKLRGHVS                 NAGG+HHHRIN D YHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 212 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKLPKQ 391
           FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K GY+ +LGKG LP+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 392 PVIVXXXXXXXXXXXXIXDVGGACVLSA 475
           P+IV            I   GGACVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 41/91 (45%), Positives = 56/91 (61%)
 Frame = +2

Query: 203 MRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKL 382
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+  K GY+ +LGKG L
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 383 PKQPVIVXXXXXXXXXXXXIXDVGGACVLSA 475
           P+ P+IV            I   GGACVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 138 PALPRPPGCLRCFPIRPCP 82
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lectin
           protein 80 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/51 (21%), Positives = 26/51 (50%)
 Frame = +2

Query: 197 LGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 349
           LG  NF+++ ++++      +  WT  + +T LK+  +    +P  N+  +
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNLASS 155


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
 Frame = +2

Query: 35  ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDX-----YHPGYFGKL 199
           +T  KK+ K  GH                   N GG   H + M+      + P  F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186

Query: 200 GMRNFHFRK 226
           G   F+F+K
Sbjct: 187 GKSFFNFKK 195


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +2

Query: 137 GGEHHHRINMDXYHPGYF-----GKLGMRN-FHFRKNKNFCPVLNLDKLW 268
           G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 253 VQNWTEILVLSKVEISHTKFAKVSR 179
           + NWT  L LSKV   H  F  ++R
Sbjct: 20  IANWTVFLFLSKVPSIHKSFGSLTR 44


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 349 SFDNIDDGDLA-IWSRCILQPRLF 281
           S  N+  G L  IWSRCI QP  F
Sbjct: 14  SSGNVQKGKLLNIWSRCIAQPSSF 37


>U28735-3|AAF99958.3|  467|Caenorhabditis elegans Glycosylation
           related protein 12,isoform a protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 134 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 36
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>U28735-2|AAM69111.1|  543|Caenorhabditis elegans Glycosylation
           related protein 12,isoform b protein.
          Length = 543

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 134 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 36
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


>AF082011-1|AAD03023.1|  467|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 467

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -1

Query: 134 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 36
           HY   LD A+  FRYDHV    D  D+     S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,613,220
Number of Sequences: 27780
Number of extensions: 212261
Number of successful extensions: 467
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)