Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m08
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   139   1e-33
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...   136   1e-32
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    46   2e-05
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    27   9.2  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  139 bits (336), Expect = 1e-33
 Identities = 71/149 (47%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDXYHPGYFGKLGMRN 211
           MAT+ KK RK RGHVS                 NAGG HHHRI  D YHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 212 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKLPK- 388
           FH  +NK FCP++NLDKLW+LV E  + K  S+ D  VP+I++ + G++ +LGKG LP+ 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPEN 117

Query: 389 QPVIVXXXXXXXXXXXXIXDVGGACVLSA 475
           +P +V            I + GGA VL+A
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score =  136 bits (328), Expect = 1e-32
 Identities = 70/149 (46%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDXYHPGYFGKLGMRN 211
           M T  KK RK RGHVS                 NAGG HHHRI  D YHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 212 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAGYYXLLGKGKLPK- 388
           FH  +NK FCP++NLDKLW+LV E  + K  S  D  VP+I++ + G++ +LGKG LP+ 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAK--STKD-NVPLIDVTQHGFFKVLGKGHLPEN 117

Query: 389 QPVIVXXXXXXXXXXXXIXDVGGACVLSA 475
           +P +V            I + GGA VL+A
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 30/82 (36%), Positives = 38/82 (46%)
 Frame = +2

Query: 32  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDXYHPGYFGKLGMRN 211
           M TS+KKTR LR HVS                 NAG                   +GMR 
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 41

Query: 212 FHFRKNKNFCPVLNLDKLWTLV 277
           FH  +NK +C ++NLDKLW++V
Sbjct: 42  FHKLRNKFYCQIVNLDKLWSMV 63


>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 299 YASAPDGKVPVINIVKAGYYXLLG 370
           Y + PDG + + N  K G+Y +LG
Sbjct: 491 YHTLPDGGIKICNGCKNGFYDVLG 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,071,697
Number of Sequences: 28952
Number of extensions: 200204
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)