Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m07
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    29   0.55 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   1.7  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   3.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   3.9  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   9.0  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    25   9.0  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   9.0  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   9.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   9.0  

>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 521 DAKKNTFHDAISETQRENNEDFHLNATELLKKHQ 622
           + KKNT ++      +   E+ H+  T LLKK Q
Sbjct: 41  EVKKNTVYERYERKLKSKAEELHMPVTNLLKKGQ 74


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 325 DERETPLAGVFCHYETQERS*YQSRRFRRLEEYRNGLR 438
           +ER    AG F H+   E     S  FRR +E R   R
Sbjct: 362 EERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERR 399


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 1   DTINCWQHEDYIRIAVSDAGAEHLLQHLHDETTQSG*HHSTPS--GLCRTADPSAETKTT 174
           D  +CWQH   + +A  D    +  +  H  +  S    ++P+     +TAD  A  +  
Sbjct: 39  DGCDCWQHASCVGLADKDIPESYYCEVCHSRSDVSSQVQNSPNKDEEHQTADLLASNEGN 98

Query: 175 QANLEQ 192
           + N E+
Sbjct: 99  EKNNEE 104


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 293  QEDETKQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSV-VWKNIEMASGPNSPVQTEQD 469
            +ED TK V  ++++   + +   I  L+ ++  NH  +  +W  I   + P S + T+++
Sbjct: 1028 EEDITKAVEKRIDITSRASISGAIEALRNDLGQNHDFATEIWNAI---NNPKSDLLTKRN 1084

Query: 470  I 472
            +
Sbjct: 1085 L 1085


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 124 PSGLCRTADPSAETKTTQANLEQEEPPAL 210
           P  L   +DP+++       +EQE P AL
Sbjct: 15  PDALLVNSDPASKVDNVSVKIEQESPLAL 43


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 447 ELGPEAISIFFQTTESP 397
           +LGP  +SIFFQ  + P
Sbjct: 315 QLGPNGLSIFFQKIKDP 331


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 25  EDYIRIAVSDAGAEHLLQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQE 195
           ED+ ++   + G E   Q L      SG   S PSGL   ++PS    +T   L+ E
Sbjct: 118 EDFGKLLAKEMGEEAAGQVL------SGVGFSIPSGLVPPSEPSKTVSSTTEELQNE 168


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 54  RWCRASPAASS*RNNTVRMTSFNTLWTMSNSRSISRNKNYTSKP 185
           RW   +P + S  +NT  +    T +  +N + IS+++   SKP
Sbjct: 197 RWLEFAPQSFS--SNTNSVNPLQTTFESTNIQEISQSRTKISKP 238


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 512 FTDDAKKNTFHDAISETQRENNEDF-HLNATELLKKHQ 622
           F ++A+K  FH  +S     N EDF +L+   + +K Q
Sbjct: 470 FLEEARKQVFHCFLSFIDSYNEEDFSYLSDIGITEKTQ 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,839
Number of Sequences: 5004
Number of extensions: 37591
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)