Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m05
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 35 0.009
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 33 0.028
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.34
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 29 0.46
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.80
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 27 1.8
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 2.4
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 2.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.4
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 27 3.2
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.2
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.2
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 5.6
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.4
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 7.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 7.4
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 7.4
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 9.8
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 9.8
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 35.1 bits (77), Expect = 0.009
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Frame = +2
Query: 362 EECIRRLRDAAALKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLV 541
+E I RL++ ++ + + +R QNLS D + ++ +S++ + K+ +S E L
Sbjct: 255 DEAIDRLKEVK--RRRIEGFERRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALK 312
Query: 542 EIFP------DDNF---DEDHVESNIKAEASRLDDVTDITSQLIKQN 655
+ D N+ D V+SN+K+ S L + SQL KQN
Sbjct: 313 PVTNKRIREGDGNYEWTDVARVDSNLKSHTSYLLFAVHLPSQLDKQN 359
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 33.5 bits (73), Expect = 0.028
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = -2
Query: 431 VLLDSAIQSVSRLPHL-VTFGYILRILHEVFGLNL 330
+L+D A+ S +RL H+ V GY+L++L EV LN+
Sbjct: 443 ILIDLAMHSANRLEHMQVPDGYLLQLLSEVNSLNM 477
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.9 bits (64), Expect = 0.34
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Frame = +2
Query: 239 KTEYSTNDSREVYQEMIENVFNIQLLTS----NHLDSSQIPRVICEECIRRLRDAAALKQ 406
K S N S+ ++ + +N N L S H D S P + RL D + +
Sbjct: 1415 KKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDS--RLEDGDNMAE 1472
Query: 407 TVLQSQEALLRFAQNLSQDIQNK----NTLEESLMTDIKTEISMEDNLVEIFPDDNF 565
Q +F Q D++ K NT+ + +++ ++M D L+ FPD NF
Sbjct: 1473 KTQQVWHVNPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNF 1529
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +2
Query: 149 NSSKMDYLIQEKNISGLCRFCLKNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNH 328
N+SK Y++ + + F + G DI +Y+ D+ + YQ++ ++ +LL +
Sbjct: 15 NNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMY 74
Query: 329 L 331
+
Sbjct: 75 I 75
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 28.7 bits (61), Expect = 0.80
Identities = 23/82 (28%), Positives = 36/82 (43%)
Frame = +2
Query: 290 ENVFNIQLLTSNHLDSSQIPRVICEECIRRLRDAAALKQTVLQSQEALLRFAQNLSQDIQ 469
E V IQL SN S+ P++ + + A+ +QT E L+RF S
Sbjct: 281 EAVDGIQL-DSNFTIESENPKIPTHTHPIPIFEIASSEQTCKNLLEKLIRFIDRASTKYS 339
Query: 470 NKNTLEESLMTDIKTEISMEDN 535
N + + +KT SM+D+
Sbjct: 340 LPNDAAQRIEDRLKTHASMKDD 361
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/115 (20%), Positives = 51/115 (44%)
Frame = +2
Query: 275 YQEMIENVFNIQLLTSNHLDSSQIPRVICEECIRRLRDAAALKQTVLQSQEALLRFAQNL 454
++E + N+ ++ S L+SS E +L ++L + Q+ + + +
Sbjct: 77 FKERLNNIGGLK--RSRTLESSYEDET---ETANKLSRVSSLVSVIRQTIDRKKSLERRV 131
Query: 455 SQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHVESNIKAEASRLDD 619
++ + K E+ +I T+ S+E+N + DD +E +I+ + DD
Sbjct: 132 REEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLEDDIEGQEFSFDD 186
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 304 IKNVFNHFLVNFSTVVSTIFSFYIFTSVIFQAKAT*AGNVFLLN*I-IHFRTICSLNTGL 128
IK F++N+ ++ T FT++ A+ + L + + HFR ICSLN G
Sbjct: 493 IKTATLVFIINY--LLRTDIDSTFFTTIFLNTYASMISSSDLFSILGAHFRFICSLNFGK 550
Query: 127 I 125
I
Sbjct: 551 I 551
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 443 QISAVLLDSAIQSVSRLPHLVTFGYILRILHEVFGLNLDD 324
Q+ L+ +A++ V+RL HL+ ++ +L + L +DD
Sbjct: 502 QLKGKLIGNALEGVARLSHLLNIEFLGDLLQVLRELVMDD 541
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 377 RLRDAAALKQTVLQSQEALLRFAQ--NLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIF 550
+L+ A+ ++ L E L + +L +++ + +++SL D++T S+ED++ +
Sbjct: 1600 KLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASLQ 1659
Query: 551 PDDNFDEDHVES 586
+ + VES
Sbjct: 1660 KECKIKSNTVES 1671
Score = 25.4 bits (53), Expect = 7.4
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Frame = +2
Query: 245 EYSTNDSREVYQEMIENVFNIQLLTSNHLDSS--QIPRVICEEC--IRRLRDAAALKQTV 412
E ++N S QE +E + L++SN S+ Q + EC ++ + A+ +
Sbjct: 241 EQASNKSLRGEQERLEKL----LVSSNKTVSTLRQTENSLRAECKTLQEKLEKCAINEED 296
Query: 413 LQSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHVESNI 592
+ E L N S I +K+ L E D+ T IS DNL + + +E +
Sbjct: 297 SKLLEELKHNVANYSDAIVHKDKLIE----DLSTRISEFDNLKSERDTLSIKNEKLEKLL 352
Query: 593 KAEASRLDDVTDITSQL 643
+ L D SQL
Sbjct: 353 RNTIGSLKDSRTSNSQL 369
>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -3
Query: 145 SLNTGLIFKRPSYFA*ETSISLYIMLIVKYLNNYVVLIVIL 23
SL +G F+ + +A + S ++ML+ N YV+L + +
Sbjct: 87 SLKSGRPFRLCALYAVQLVFSYFLMLVAMTYNAYVILAIAI 127
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 458 QDIQNKNTLEESLMTDIKT-EISMEDNLVEIFPDDNFDEDHVESNIKAE 601
Q Q + TLEES +TD++T E S N VE+ D +S +++E
Sbjct: 436 QRAQERLTLEESKLTDLRTAEPSQYVNDVEVARRALRDAQAEQSKVESE 484
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 245 EYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQIPRVIC 361
E TN S E+ + +++ + L S+HL S Q VIC
Sbjct: 1419 ELFTNISPEIKELSVDSTSTLGGLNSSHLVSDQNASVIC 1457
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 251 YIQFLYLYFRYFSS 210
YI++LYL+ RYF S
Sbjct: 95 YIEYLYLFARYFGS 108
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 470 NKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHVE 583
+KN L + ++ + E+ D+ VE DD+ DED E
Sbjct: 180 SKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDE 217
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 7.4
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Frame = +2
Query: 275 YQEMIENVF---NIQLLTSNHLDSSQIPRVICEECIRRLRDAAALKQTVLQSQEALLRFA 445
Y++ ++N +Q+L S Q P + ++ + RD A Q + S ++
Sbjct: 739 YEDNLDNELYKLTVQVLGLKLTGSIQNPLTLSKKLLSSWRDDFA--QYITNS----IKQP 792
Query: 446 QNLSQDIQNKNTL-EESLMTDIKTEISMEDNLVEIFPDDNFDEDHVESNIKAEASRLDDV 622
N Q+K TL +S M +K+ IS +V+ D N +D VES I A + + D
Sbjct: 793 PNSESKGQSKKTLLHDSNMESLKSVIS---RIVK--KDSNQSDDSVESTILAAFALVTDT 847
Query: 623 T 625
T
Sbjct: 848 T 848
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 101 LGNLYFFIHHVNC*IFK*LCCFDCNFIH 18
+G+ F+H ++ I + LCCF NFI+
Sbjct: 269 IGDSQLFLH-LHSRIVQTLCCFSLNFIY 295
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 166 IHFRTICSLNTGLIFKRPSYFA*ETSISLYIMLIVKYLNNYVVLIV 29
+H +L L F R ++ + ++ ML+ Y N YV+L +
Sbjct: 192 VHSGPSMALRIFLHFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFL 237
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 242 FLYLYFRYFSSKSDIGRKCFSLELNNPF 159
F YL+ YFS KS C S E++ F
Sbjct: 151 FCYLFSSYFSYKSSRQYTCSSEEISKVF 178
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 151 ICSLNTGLIFKRPSYFA*ETSISLYIMLIVKYLNNYVVLIVILFIWQEIN 2
I LN ++F P T I+ IV ++ NYV+ + W++ N
Sbjct: 740 IGKLNAPVLFTGPGNIPPATGINYSSWAIVGFIFNYVIRKRAIHWWRKYN 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,010
Number of Sequences: 5004
Number of extensions: 47766
Number of successful extensions: 175
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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