Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m05
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 31 0.62
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 31 0.82
01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530... 31 0.82
07_01_0274 + 2017770-2017865,2019347-2019697 29 2.5
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 29 3.3
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 29 3.3
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 28 5.8
06_01_0440 + 3127197-3127700,3128299-3128670 28 5.8
05_05_0147 + 22715144-22715444,22716245-22716407,22716484-227165... 28 7.7
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +2
Query: 359 CEECIRRLRDAAALKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNL 538
C++ RL+ ALK +LQ+QE R + + ++N +T EE + + ++ L
Sbjct: 208 CQQSSDRLQ---ALKSEILQTQEEFKRLKEEMQNGLENLSTAEERCLLLERANQNLYSEL 264
Query: 539 VEIFPDDNFDEDHVESNIK 595
++ D E H E N K
Sbjct: 265 DKLKNDSK--ERHGELNEK 281
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 31.1 bits (67), Expect = 0.82
Identities = 26/112 (23%), Positives = 57/112 (50%)
Frame = +2
Query: 215 KNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQIPRVICEECIRRLRDAA 394
K SK+ + E N+ + +EN +L + L+ S+I +++ E+ ++L+
Sbjct: 611 KKQASKERELEEKENELNRK-MDFVEN----ELKRAAELNESKIQKILLEK--KQLQKE- 662
Query: 395 ALKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIF 550
K+ +++ ++ L ++ +DI + NTL +SL + +NL++IF
Sbjct: 663 --KEVLVEDRQKLETDKADIRRDIDSLNTLSKSLKERREAYNRDRNNLIDIF 712
>01_01_0690 -
5306754-5307047,5307107-5307279,5308223-5308370,
5309110-5309356,5309694-5309839,5312482-5312707,
5313652-5313874,5314054-5314202,5315345-5315514,
5316064-5316135,5317610-5317741,5317813-5317900,
5319440-5319656,5320123-5320306,5320644-5320727,
5321148-5321242,5321519-5321562,5321707-5322367,
5323053-5323356
Length = 1218
Score = 31.1 bits (67), Expect = 0.82
Identities = 28/118 (23%), Positives = 52/118 (44%)
Frame = +2
Query: 203 RFCLKNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQIPRVICEECIRRL 382
RF L +G K+ K + + + ++ + ++D P ++ I +
Sbjct: 455 RFFLYKDGGKENKMKEENREEENKKCTSSVRCYFVRTESGWNMDE---PYILSGRTIGQA 511
Query: 383 RDAAALKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPD 556
RD +TVL + +LRFA +S+ I L E L+ I E ++++ E+F D
Sbjct: 512 RDLFMHIRTVLTLAKYMLRFALIVSKTITLDVDLSEVLVKLIDDEPCLDEHGKEVFRD 569
>07_01_0274 + 2017770-2017865,2019347-2019697
Length = 148
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 491 SLMTDIKTEISMEDNLVEIFPDDNFDEDHVESNIKAEASRLDDVTDITSQLIKQNYV 661
S MT KT+ ++DN E+ D F+E S I A+ + D IT LI +V
Sbjct: 36 SSMTSSKTKTPVDDNCFELLGDKYFEE---RSRIFAQLVKEDARYYITGNLIPYTFV 89
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 200 CRFCLKNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQ--IPRVICEECI 373
C++ ++ N KDI+ E D+ E +E + V +I + + H + S R + + I
Sbjct: 701 CKYAIRENIEKDIEMEKRRKDNPEAMEE--DEVDDIAEIKAAHFEESMKYARRSVSDADI 758
Query: 374 RRLRDAAALKQTVLQSQ 424
R+ + A QT+ QS+
Sbjct: 759 RKYQ---AFAQTLQQSR 772
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +2
Query: 416 QSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHVESNIK 595
+ +E FAQ + ++ + EE +++ E+ VE+ DDN DH I+
Sbjct: 366 EEEEQGRAFAQVKEEQVEEQEEDEEEGEEEMEMEVE-----VEVRSDDN---DHGNGGIR 417
Query: 596 AEASRLDDVTDITSQ 640
E DDV +I +
Sbjct: 418 GEGGGTDDVAEIEEE 432
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 200 CRFCLKNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQ--IPRVICEECI 373
C++ ++ N KDI+ E + ++ E +E + V +I + + H + S R + + I
Sbjct: 710 CKYAIRENIEKDIERERRSKENPEAMEE--DEVDDIAEIKAAHFEESMKYARRSVSDADI 767
Query: 374 RRLRDAAALKQTVLQSQ 424
R+ + A QT+ QS+
Sbjct: 768 RKYQ---AFAQTLQQSR 781
>06_01_0440 + 3127197-3127700,3128299-3128670
Length = 291
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 413 IQSVSRLPHLVTFGYILRILHEV 345
I+S+ RLPHLV G+I R + V
Sbjct: 158 IESIPRLPHLVGIGHIARAIRFV 180
>05_05_0147 +
22715144-22715444,22716245-22716407,22716484-22716532,
22716626-22716739,22716812-22717234,22717307-22717693,
22717777-22717872,22717978-22718093,22718137-22718272,
22718392-22718480,22718586-22718736,22719057-22719185,
22719276-22719354,22719435-22719544
Length = 780
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 497 LMILLMYFYFECPVINFEQISAVLLDSAIQSVSRLP------HLVTFGYILRILHEVF 342
LMIL+M F F +F + S V L S + ++ HL+ YIL +LH F
Sbjct: 412 LMILIMSFSFTLATHSFRR-SVVKLPSPLHHLAGFNAFWYAHHLLVIAYILLVLHSYF 468
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,858,601
Number of Sequences: 37544
Number of extensions: 238985
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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