Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m05
         (666 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    38   2e-04
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   3.7  
AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.    24   5.0  

>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 38.3 bits (85), Expect = 2e-04
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 11/159 (6%)
 Frame = +2

Query: 200 CRFCLKN-NGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQIPRVICEECIR 376
           CRFCL   N    I    +  +S      +++    ++L+ +        P  +CE CI 
Sbjct: 15  CRFCLSEINLLNVIGPSAAEQESHAELFRLVKTYLKLELVPAK-----DFPSAVCEMCIA 69

Query: 377 RLRDAAALKQTVLQSQEAL-LRFAQNLSQDIQNK---NTLEESLMTDIKTE----ISMED 532
            L D   L Q V   + AL L      S+D+++    +T+E +L+   +      I   +
Sbjct: 70  LLHDFDTLYQNVHDHRYALRLLLETQKSEDVESSIPVSTIEPNLVEVYEPPPVVLIDTGN 129

Query: 533 NLVEIFPDDN--FDEDHVESNIKAEASRLDDVTDITSQL 643
           N+VE+  DD    ++  VE     +     DV  +  QL
Sbjct: 130 NVVEVNTDDQIVLEDGSVEGESNEQEEAQIDVYHVDGQL 168


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
 Frame = +2

Query: 371 IRRLRDAAALKQTVLQSQEALLR-FAQNLSQ------DIQNKNTLEESLMTDIKTEISME 529
           I+  +D+A ++ ++ ++ E  +R F+++         +I N+   +++ +  I+      
Sbjct: 71  IKNGKDSATIRISIYRNNERAVRWFSRSFDHSAKSTFEIDNQTVSQQAYLQQIRAFNIQV 130

Query: 530 DNLVEIFPDDNFDE 571
           DNL +  P D   +
Sbjct: 131 DNLCQFLPQDRVQD 144


>AF457551-1|AAL68781.1|  406|Anopheles gambiae calreticulin protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 554 DDNFDEDHVESNIKAEASRLDD 619
           +D  DED  ++ +  EA+ LDD
Sbjct: 379 EDEDDEDDADNALPGEATELDD 400


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,608
Number of Sequences: 2352
Number of extensions: 12032
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)