Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m05
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.37 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.86 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.86 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.86 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 233 DIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQIP 349
           DIKTE ST  + ++  E  E   N + L  + +D  Q+P
Sbjct: 303 DIKTELSTGMNDDIPPETEEEEENDKKLDLDSIDMMQLP 341


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 645 MSCDVISVTSSNLEASALIFDSTWS 571
           ++CDV+  T+S L   A+  D  W+
Sbjct: 113 LTCDVLCCTASILNLCAIALDRYWA 137


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 645 MSCDVISVTSSNLEASALIFDSTWS 571
           ++CDV+  T+S L   A+  D  W+
Sbjct: 113 LTCDVLCCTASILNLCAIALDRYWA 137


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 645 MSCDVISVTSSNLEASALIFDSTWS 571
           ++CDV+  T+S L   A+  D  W+
Sbjct: 113 LTCDVLCCTASILNLCAIALDRYWA 137


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 413 IQSVSRLPHLVTFGYILRILH-EVFGLNLDD 324
           ++   ++ H  T GYI R+L  E + + LDD
Sbjct: 443 VKQYVKVKHSATLGYISRVLEKEPYVIILDD 473


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 551  PDDNFDEDHVESNIKAEASRLDDVTDITSQLIKQNY 658
            P  N D+++   N   E++ + +      QL+ +NY
Sbjct: 1863 PPRNHDQNNSSFNDSKESNEISEAECDRDQLVNRNY 1898


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,422
Number of Sequences: 438
Number of extensions: 3218
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)