Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m05
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67140.1 68414.m07638 expressed protein 31 0.91
At1g73850.1 68414.m08550 expressed protein 30 1.2
At4g20060.1 68417.m02935 expressed protein ; expression support... 30 1.6
At5g56230.1 68418.m07017 prenylated rab acceptor (PRA1) family p... 29 2.1
At4g19320.1 68417.m02847 hypothetical protein simlar to At5g2817... 29 2.1
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 28 4.9
At2g26820.1 68415.m03218 avirulence-responsive family protein / ... 28 4.9
At5g17090.1 68418.m02002 expressed protein 28 6.4
At1g35660.1 68414.m04432 expressed protein 28 6.4
At1g35110.1 68414.m04352 Ulp1 protease family protein similar to... 28 6.4
At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containi... 27 8.5
At5g36020.1 68418.m04339 hypothetical protein similar to At5g281... 27 8.5
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 27 8.5
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 27 8.5
At2g25350.1 68415.m03032 phox (PX) domain-containing protein wea... 27 8.5
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 30.7 bits (66), Expect = 0.91
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Frame = +2
Query: 212 LKNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSS-QIPRVICEECIRRLRD 388
L ++ + DI E S + S+EV +E E V + +D S ++ + C+ + D
Sbjct: 2012 LASDHATDITREDSNDKSKEVVEE--ETVEPCFTTREDSVDKSKEVEEETVKPCL--IED 2067
Query: 389 AAALKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMTDIK---TEI------SMEDNLV 541
A + S + + + Q +++KN E++ TDIK TE+ +E +
Sbjct: 2068 ALTSQNDKTSSGDHPVEINE---QSVESKNLESENIGTDIKLASTEVESPALDDLEPQQI 2124
Query: 542 EIFPDDNFDEDHVESNI 592
+ P+D ++HV +++
Sbjct: 2125 QKSPEDESSKEHVGADV 2141
>At1g73850.1 68414.m08550 expressed protein
Length = 575
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 509 KTEISMEDNLVEIFPDDNFDEDHVESNIKAEASRLDDVTDI 631
++ I ED+ VE PDD +D+D + + SR D V D+
Sbjct: 87 ESSIEEEDDGVEDLPDDRYDDDDEDEEV-GGVSRYDVVEDL 126
>At4g20060.1 68417.m02935 expressed protein ; expression supported
by MPSS
Length = 1134
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 398 LKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMT 502
LK VL++ L+ L+QD++NKN +EE L+T
Sbjct: 727 LKTRVLETVLELVECLGLLNQDLRNKNQVEEILLT 761
>At5g56230.1 68418.m07017 prenylated rab acceptor (PRA1) family
protein contains Pfam profile PF03208: Prenylated rab
acceptor (PRA1)
Length = 186
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 310 LNIKNVFNHFLVNFSTVVSTIFSFYIFTS 224
L K FN+F VN++ +VST +F + T+
Sbjct: 58 LRSKTNFNYFFVNYTIIVSTCAAFALITA 86
>At4g19320.1 68417.m02847 hypothetical protein simlar to At5g28170,
At1g35110, At1g44880, At3g42530, At5g36020, At4g03970,
At3g43010, At2g10350
Length = 721
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 407 TVLQSQ-EALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHV 580
TVL +Q ++ +Q ++ N +EE+L T + +++E P++N D+DH+
Sbjct: 579 TVLYNQFDSSANLSQKEQSHLEQDNIMEETLET-----VEASHSVLETQPEENIDDDHM 632
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 200 CRFCLKNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQ--IPRVICEECI 373
C++ ++ N KDI+ E +S E +E E + I+ + H + S R + + I
Sbjct: 699 CKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAEIK---AGHFEESMKYARRSVSDADI 755
Query: 374 RRLRDAAALKQTVLQSQ 424
R+ + A QT+ QS+
Sbjct: 756 RKYQ---AFAQTLQQSR 769
>At2g26820.1 68415.m03218 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains
Pfam profile PF04548: AIG1 family
Length = 463
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = +2
Query: 224 GSKDIKTEYSTNDSREVYQ--EMIENVFNIQLLTSNHLDSSQIPRVICEECIRRLRDAAA 397
G K + S ++ ++V Q +++ V N+ T + Q+ R I EE RLR+
Sbjct: 164 GRKVLFDNKSKDEKKKVEQVKQLLARVENVGEQTGGIPYTYQLHRKIKEENDERLREEER 223
Query: 398 LKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVE 544
+ ++ +++ L QNL + + K +EE+ + + + L+E
Sbjct: 224 VIESKNRAEAELAEMQQNLLME-KEKLQMEEAKNKQLIAQAEANEKLME 271
>At5g17090.1 68418.m02002 expressed protein
Length = 230
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 86 NRGFLSKITRPFKY*PCIQTANSSKMDYLIQEKNISGLCRFCLKNNGSKDIKT 244
NRGFL PF + IQ + D + + ++GL C+K KT
Sbjct: 116 NRGFLPD---PFNFIDAIQNLDGPAYDNMTNREYLAGLASSCVKKLNDLKAKT 165
>At1g35660.1 68414.m04432 expressed protein
Length = 1155
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 422 QEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHVESNI 592
+E+ L F N Q LEE + + I+ +N F +D F EDH SNI
Sbjct: 391 EESDLTFESNGVQREVKITDLEEEALDPVT--IADHENETVTFSEDKFTEDHSVSNI 445
>At1g35110.1 68414.m04352 Ulp1 protease family protein similar to
At5g28170, At1g44880, At3g42530, At4g19320, At5g36020,
At4g03970, At3g43010, At2g10350 ; contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain
Length = 1311
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 449 NLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHV 580
NLSQ Q+ ++++M + + +L+E P++N D DH+
Sbjct: 813 NLSQKEQSPLE-QDNIMEETLETVEASHSLLETQPEENIDNDHM 855
>At5g40400.1 68418.m04900 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 686
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +2
Query: 272 VYQEMIENVFNIQLLTSNHLDSSQIPRVICEEC 370
V++E++++ F++ ++T NHL + + + E+C
Sbjct: 227 VFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDC 259
>At5g36020.1 68418.m04339 hypothetical protein similar to At5g28170,
At1g35110, At1g44880, At3g42530, At4g19320, At4g03970,
At3g43010, At2g10350
Length = 721
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 410 VLQSQ-EALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHV 580
VL +Q ++ +Q ++ N +EE+L T + +++E P++N D+DH+
Sbjct: 580 VLYNQFDSSANLSQKEQSPLEQDNIMEETLET-----VEASHSVLETQPEENIDDDHM 632
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +2
Query: 446 QNLSQDIQNKNTLEESLMTDIKTEISMEDNLVEIFPDDNFDEDHVESNIKAEASRLDDVT 625
+N +++ K+ +E D++ E S+ D + + N D V++NIK +SRL+ +
Sbjct: 87 KNKKKEVAVKSDEDEDEQ-DVRGEQSLVDAVSNLISPLNSRFDTVDNNIKEMSSRLEVIG 145
Query: 626 D 628
D
Sbjct: 146 D 146
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 200 CRFCLKNNGSKDIKTEYSTNDSREVYQEMIENVFNIQLLTSNHLDSSQ--IPRVICEECI 373
C++ ++ N KDI+ E +++ E +E + V + + + H + S R + + I
Sbjct: 699 CKYAIRENIEKDIEKEKRRSENPEAMEE--DGVDEVSEIKAAHFEESMKYARRSVSDADI 756
Query: 374 RRLRDAAALKQTVLQSQ 424
R+ + A QT+ QS+
Sbjct: 757 RKYQ---AFAQTLQQSR 770
>At2g25350.1 68415.m03032 phox (PX) domain-containing protein weak
similarity to SP|Q9UTK5 Abnormal long morphology protein
1 (Sp8) {Schizosaccharomyces pombe}; contains Pfam
profile PF00787: PX domain
Length = 643
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +2
Query: 362 EECIRRLRDAAALKQTVLQSQEALLRFAQNLSQDIQNKNTLEESLMTDIKTEISMEDNLV 541
E+ I RL A+K+ + + + L + Q +NK LE++LMT+ ++ M+ ++
Sbjct: 400 EDLIARLNQETAVKEYLNRKVDDLEVELETTKQ--RNKENLEQALMTERQSVTKMQWDME 457
Query: 542 EI 547
E+
Sbjct: 458 EL 459
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,660
Number of Sequences: 28952
Number of extensions: 221672
Number of successful extensions: 696
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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