Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m04
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.0  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   4.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.9  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 243 LSHRLDLHSRGRSSRQYRSHHSPD 172
           L H LDL  RG   RQ+    S D
Sbjct: 622 LKHALDLDRRGLLHRQFNLPPSKD 645


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 460 LPSPRRMVFPVFLVSD 507
           LPSPRR+  PV LV D
Sbjct: 113 LPSPRRVAVPV-LVRD 127


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 253 RRWEPLTAARSLSSQPQPLLP 315
           +R+ P   A S+  +P PL+P
Sbjct: 224 QRYNPYLQAASMLPKPTPLVP 244


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 638 VAIGXWATTTAPTSAIVAQ 582
           VA+G WA   +  SA+VA+
Sbjct: 99  VAVGGWAEGGSKYSAMVAE 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,864
Number of Sequences: 336
Number of extensions: 2373
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)