Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m04
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    28   1.1  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    28   1.1  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    26   5.7  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   5.7  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   5.7  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 30/127 (23%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
 Frame = -3

Query: 492 DRKYHSPR*WQQHHPHSHSRYRQAQLLGTRPRHQQYPGRAGYRRHRLNPRKYSQTLCPDX 313
           DRK    R   +HH  +  R R+          ++   R  YR  R N R+ +       
Sbjct: 164 DRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRH 223

Query: 312 XXXXXXXXXXXXXXXXLPAPQQRLSHRLDLHSRGRSSRQYRSHHSPDYRNPTR----RVG 145
                           +   Q       DL    R+SRQY    SPD+R        R  
Sbjct: 224 RDKYDSGYFKKHYDDDMRFDQGHFQDERDLKKYVRTSRQYSRSPSPDFRTRNHQFHSRDS 283

Query: 144 QPATNQY 124
           QP T ++
Sbjct: 284 QPITQRH 290


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 461 NSTIPTAIVDTAKPSCWELARDISSTQEGQVTADTD 354
           N  + +  +DT  P  W  A++I++    ++ +DTD
Sbjct: 85  NERVYSLTLDTGSPYTWVTAKNITALSASEIWSDTD 120


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 385 PRKGRLPQTPTEPS*IFSDAMPR 317
           PR+GR P  PT  S   S A+P+
Sbjct: 239 PRRGRAPNNPTSDSISRSKAVPK 261


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 142 ARNEPIRPAHWLT 104
           ++NEP RP HW+T
Sbjct: 36  SQNEPDRPQHWIT 48


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 222 HSRGRSSRQYRSHHSPDYRNPTRRVGQPATN 130
           H +GR++R+ + H++  YRN    +  P  N
Sbjct: 278 HHKGRNTRKGQRHNNGFYRNIANNIQGPFPN 308


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 246 RLSHRLDLHSRGRSSRQYRSHH 181
           R+ HR D +  GR  R YR H+
Sbjct: 51  RMDHRPDGYHDGRGRRAYRKHY 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,011
Number of Sequences: 5004
Number of extensions: 38249
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)