Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m04
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0176 - 23329589-23331043                                         30   1.9  
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209...    29   4.5  
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342...    28   5.9  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    28   5.9  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    28   7.8  
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    28   7.8  

>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 495 KDRKYHSPR*WQQHHPHSHSRYRQAQLLGTRPRHQQYPGRAGYRRHRLNPRKYSQ 331
           ++R  + PR  ++   H  +     +  G R R+Q+YP R   RR R+  R  S+
Sbjct: 418 EERGRYRPRVLEEEREHERNWDESDRYGGDRRRYQEYPERDFERRGRVRSRSSSR 472


>03_03_0248 +
           15819264-15819460,15820691-15820729,15820797-15820936,
           15821150-15821225,15822866-15823160,15823236-15823342,
           15823442-15823489,15823568-15823853,15823954-15823961,
           15824083-15824184,15824426-15824553,15824664-15824741,
           15825047-15825145,15825247-15825302
          Length = 552

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -3

Query: 261 PAPQQRLSHRLDLHSRGRSSRQYRSHHSPDYRNPTRRVGQPATNQY 124
           P  +QR S   D +SRGR SR      SP Y     R G  A + Y
Sbjct: 283 PYREQRRSPSYDSYSRGRRSRSRSRSRSPSYSRRHGR-GTHAESNY 327


>09_04_0489 -
           18031187-18031579,18032033-18034030,18034102-18034234,
           18035360-18036108
          Length = 1090

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 333 ENIYEGSVGVCGNLPFLGTADVAGEF 410
           EN Y GS   CG+LP  GT+    +F
Sbjct: 906 ENQYNGSTRPCGSLPTAGTSGSIDDF 931


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 243 LSHRLDLHSRGRSSRQYRSHHSPDYRNPTRRVGQPATNQY 124
           LS  L LH   R   ++ SH  P+ R+P+ R G  ATN +
Sbjct: 213 LSALLSLHLFRRLRHRHHSHSHPNARSPSSRSG--ATNHH 250


>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
            19799503-19799671,19799758-19799850
          Length = 1330

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 307  LLPVWA*RLRIFTRVQSVSAVTCPSWVLLMSRASSQQLGLAVSTMAVGMVLLPSPRRMVF 486
            L P+W  R ++ T++  +  V CP W  L S AS   L   +      +  +  P     
Sbjct: 885  LPPLWI-RRKVLTKLVRLKIVGCPKWDDLPSFASLSSLKHVLLEDLPNLKCIGGPDGDGL 943

Query: 487  PVFLVS 504
            P FLV+
Sbjct: 944  PPFLVT 949


>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 219 SRGRSSRQYRSHHSPDYRN--PTRRVGQPATNQYGQHI 112
           S GR + Q  + H+ DY N  PT R G  +   +GQH+
Sbjct: 606 SLGRGAEQKSNDHNQDYLNVLPTERQGHGSN--HGQHV 641


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,221
Number of Sequences: 37544
Number of extensions: 297322
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)