Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m04
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              31   0.64 
SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)                    31   1.1  
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)              30   2.0  
SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 501 NQKDRKYHSPR*WQQHHPH-SHSRYRQAQLLGTRPR--HQQYPGRAGYRRHRLNPRKYSQ 331
           NQK RK    R   +H P   + +  Q Q  G  P+   QQYPG + Y    + P+ Y Q
Sbjct: 568 NQKHRKRPRHRQRDRHPPQPQYLQEYQQQAQGMYPQGYQQQYPGPSQYSMGYMAPQGYHQ 627

Query: 330 TL 325
           ++
Sbjct: 628 SM 629


>SB_25454| Best HMM Match : zf-A20 (HMM E-Value=7.5)
          Length = 320

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 482 YFRSFWFRIRAGRRCXYSRLGRSHHWLRNRNLFPGLQWRW 601
           Y  S W R+     C  +  G +  W R+R+LFPG ++ W
Sbjct: 232 YASSLWDRL--SDPCVCADKGWAVQWPRHRSLFPGFRFEW 269


>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
          Length = 1145

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +2

Query: 425 WRYLLWLWGWCCCHHRGEWYF---RSFWF 502
           W YL+    WC    RGEWY+   R  W+
Sbjct: 794 WYYLITRGEWCYLITRGEWYYLITRGEWY 822


>SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 406 SPATSAVPRKGRLPQTPTEPS*IFSDAMPRPVGAAEVETT 287
           +PAT   P   R P  PT P        PRP GA + +++
Sbjct: 509 TPATRQAPSPSRRPPQPTTPRREAPTVQPRPQGAQQSQSS 548


>SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 146 ASPQRTNTASTLAYSRLKHENKSARNQQNSRHYAAKM 36
           ASPQ + +AS+     L H  K  R +QN R  A K+
Sbjct: 264 ASPQDSMSASSATDDALFHRFKVCRKKQNHRFNAVKI 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,302,275
Number of Sequences: 59808
Number of extensions: 326804
Number of successful extensions: 1151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)