Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m04
(671 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK125511-1|BAC86188.1| 559|Homo sapiens rome) (ELN). protein. 34 0.40
X79201-1|CAA55792.1| 391|Homo sapiens SYT protein. 30 8.7
U10324-1|AAA20994.1| 671|Homo sapiens NF90 protein protein. 30 8.7
CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein. 30 8.7
CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein. 30 8.7
BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma transl... 30 8.7
BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma transl... 30 8.7
AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protei... 30 8.7
AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2... 30 8.7
AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1... 30 8.7
>AK125511-1|BAC86188.1| 559|Homo sapiens rome) (ELN). protein.
Length = 559
Score = 34.3 bits (75), Expect = 0.40
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 410 PNSWAWRYLLWLWGWCCCHHRGEWYFRSFWFR 505
P +W+W W W WC C W + S W R
Sbjct: 526 PWTWSWCRRPWTWSWCWCSWTWSWCWCS-WLR 556
Score = 33.5 bits (73), Expect = 0.70
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 404 RVPNSWAWRYLLWLWGWCCC 463
R P +W+W + W W WC C
Sbjct: 533 RRPWTWSWCWCSWTWSWCWC 552
Score = 31.9 bits (69), Expect = 2.1
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 395 CRGRVPN-SWAWRYLLWLWGWC 457
C+ P+ SWAW + W W WC
Sbjct: 511 CQSPAPSCSWAWCWHPWTWSWC 532
>X79201-1|CAA55792.1| 391|Homo sapiens SYT protein.
Length = 391
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 292 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGY 331
>U10324-1|AAA20994.1| 671|Homo sapiens NF90 protein protein.
Length = 671
Score = 29.9 bits (64), Expect = 8.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 440 WLWGWCCCHHR 472
W+W WCCC R
Sbjct: 109 WIWSWCCCVRR 119
>CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 292 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGY 331
>CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 292 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGY 331
>BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 288 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGY 327
>BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 288 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGY 327
>AF257501-1|AAG31035.1| 369|Homo sapiens SYT/SSX4v fusion protein
protein.
Length = 369
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 264 QQYYPDGNSQYGQQQDAFQGPPPQQGYPPQQQQYPGQQGY 303
>AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 457
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 288 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGY 327
>AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 457
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = -3
Query: 462 QQHHPHSHSRYRQAQ--------LLGTRPRHQQYPGRAGY 367
QQ++P +S+Y Q Q G P+ QQYPG+ GY
Sbjct: 288 QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGY 327
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,091,517
Number of Sequences: 237096
Number of extensions: 1621008
Number of successful extensions: 4159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4119
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -