Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10m04
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 4.0
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 4.0
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 4.0
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 28 6.9
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 6.9
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 28 6.9
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 28 6.9
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 28 6.9
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 6.9
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 6.9
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 28 6.9
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 462 QQHHPHSHSR-YRQAQLLGTRPRHQQ 388
QQH PH S+ ++Q Q G +P+H Q
Sbjct: 1170 QQHQPHPLSQAHQQQQTAGVQPQHHQ 1195
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 462 QQHHPHSHSR-YRQAQLLGTRPRHQQ 388
QQH PH S+ ++Q Q G +P+H Q
Sbjct: 1186 QQHQPHPLSQAHQQQQTAGVQPQHHQ 1211
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 462 QQHHPHSHSR-YRQAQLLGTRPRHQQ 388
QQH PH S+ ++Q Q G +P+H Q
Sbjct: 1186 QQHQPHPLSQAHQQQQTAGVQPQHHQ 1211
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
trithorax-related protein LIN-59 protein.
Length = 1312
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 498 QKDRKYHSPR*WQQHHPHSHSRYRQAQLLGTRPRHQQYPGRA 373
Q+ +Y++ Q HHP + S Q Q G R HQ +P +A
Sbjct: 8 QQRYRYNARSDEQHHHPSTSSHQYQQQ--GARQMHQMHPIQA 47
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = -3
Query: 261 PAPQQRLSHRLDLHSRGRSSRQYRSHHSPDYRNP-TRRVGQPA-----TNQYGQHIG 109
PAP ++H + G S Y H +NP R V Q T Q+G G
Sbjct: 907 PAPPAAMTHSMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFG 963
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 498 QKDRKYHSPR*WQQHHPHSHSRYRQAQLLGTRPRHQQYPGRA 373
Q+ +Y++ Q HHP + S Q Q G R HQ +P +A
Sbjct: 8 QQRYRYNARSDEQHHHPSTSSHQYQQQ--GARQMHQMHPIQA 47
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = -3
Query: 261 PAPQQRLSHRLDLHSRGRSSRQYRSHHSPDYRNP-TRRVGQPA-----TNQYGQHIG 109
PAP ++H + G S Y H +NP R V Q T Q+G G
Sbjct: 905 PAPPAAMTHSMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFG 961
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = -3
Query: 261 PAPQQRLSHRLDLHSRGRSSRQYRSHHSPDYRNP-TRRVGQPA-----TNQYGQHIG 109
PAP ++H + G S Y H +NP R V Q T Q+G G
Sbjct: 905 PAPPAAMTHSMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFG 961
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = -3
Query: 261 PAPQQRLSHRLDLHSRGRSSRQYRSHHSPDYRNP-TRRVGQPA-----TNQYGQHIG 109
PAP ++H + G S Y H +NP R V Q T Q+G G
Sbjct: 905 PAPPAAMTHSMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFG 961
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Frame = -3
Query: 261 PAPQQRLSHRLDLHSRGRSSRQYRSHHSPDYRNP-TRRVGQPA-----TNQYGQHIG 109
PAP ++H + G S Y H +NP R V Q T Q+G G
Sbjct: 905 PAPPAAMTHSMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGDSFG 961
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 503 ETRKTGNTILRGDGNSTIPTAIVDTAKPSCWELARDI--SSTQEGQVTA 363
E R G T L D + I + KP CW D+ SST E +V A
Sbjct: 682 EMRTMGPTGLWSDWTTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVA 730
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,152
Number of Sequences: 27780
Number of extensions: 224957
Number of successful extensions: 709
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -