Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10m04
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.66 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = -3

Query: 456 HHPHS----HSRYRQAQLLGTRPRHQQYP 382
           HH HS    HS Y  A  +G  P H  +P
Sbjct: 441 HHQHSTPLAHSSYPAAIQIGHTPHHHPHP 469


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 456 HHPHSHSRYRQAQLLGTRPRHQ 391
           +HPH H   +     G+ P HQ
Sbjct: 316 YHPHQHHPSQYHPHRGSSPHHQ 337


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 471 R*WQQHHPHSHSRYRQAQLLGTRPRHQQYP 382
           R W+Q+    +S  R ++ L  +  H+ YP
Sbjct: 44  RRWKQYQDTLYSGTRSSESLTAQAHHRLYP 73


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 509 VSETRKTGNTILRGDGNSTIPTAIVDTAKPSCWELAR 399
           V E+R+  N +   DG  TI     D  +PS + L R
Sbjct: 38  VVESRELTNLVEIFDGRGTIFEGHDDREQPSVYPLLR 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,593
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)